Non-Coding RNA Search

Ss1.1-rebs20c_h12.5

Sequence:


               
               CGGCTGGAAGATTTTGAGTTTTATAGCAAACCGTATTATACAGACCCGGGGCCCAGGGGC
CCAGCCCGGCTGGGTCCCCTACTTGTCCCCCGCCGGGCTGCCTCCTCCCCCTCCCCCAAG
CGGCCCCATCCTCAAGCCTTTCGCGATCCCCAGGACCCCCTCCCTTCCGGCCTTTGGTCC
GCCCAGCCCCTCCCCCCACCCGCGCACCTCCCTGTTACCTGAGGTATGTGGATAGATCCC
CCCTCCCCTACATGGTACATCCTGGCTCCCCAGGGAGGCCAGGGATGAGGGGCGGGACCT
GGCCCCGACTCCTCCCCCTGGCTCCCCAAGCCCCGCCCCCGCAGTGGAGGCAAGGGAAAG
GGAGGGCCAACAGTCTGTTACTAAGTTCCCATGGCAACTAAGAGGGGCCATTTCCAGCCT
TAGCACTGGCTTTGGGAGGTGTCCATTGGCTGCTAATTCCATGGCAACCAGGAGTGGCAG
TTCCCTGGGCAAATGGGATACAAGTTTCCATGACGATGAAAGAGTGGGAAGAGCCAAGCT
GGAGGAGTCCCATCTTCCCCATCATTGGGCTGGCACCCCACCCCACCCCCACCTCAGGTC
AGGAGGGAGGGGTGGAGTTGGTCAATACAGTAAAGCAAGAGAGAGCCTGGGGGTGGTACA
GTCCAAACTGGGTGTCCACCGGTCCAGTCTCAGTCCAAGCTGGTCCCGTCCCCTCACACT
CCGGCTCCCCCAGGTCCGAGGTTCCCCCGGTTCAAGTAACACTTCAGTACAGATGAATGT
TCAAGTATAGTGCGGGGAGGCAGGTAGGGGGCTGGGGTACCCCTCACCACTCCCCAGGGC
CGCGCTGAACAGCGGGTAGGCCGCAGCCCCCACTCCTCACAATAGCTGCCATTGTCAGTG
ACGTTCAAGGAGTCAGGGTTGGGGGGAAGGAACTGAAATCTGAGGAGGGAGGAAGGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGGAAGATTTTGAGTTTTATAGCAAACCGTATTATACAGACCCGGGGCCCAGGGGC
CCAGCCCGGCTGGGTCCCCTACTTGTCCCCCGCCGGGCTGCCTCCTCCCCCTCCCCCAAG
CGGCCCCATCCTCAAGCCTTTCGCGATCCCCAGGACCCCCTCCCTTCCGGCCTTTGGTCC
GCCCAGCCCCTCCCCCCACCCGCGCACCTCCCTGTTACCTGAGGTATGTGGATAGATCCC
CCCTCCCCTACATGGTACATCCTGGCTCCCCAGGGAGGCCAGGGATGAGGGGCGGGACCT
GGCCCCGACTCCTCCCCCTGGCTCCCCAAGCCCCGCCCCCGCAGTGGAGGCAAGGGAAAG
GGAGGGCCAACAGTCTGTTACTAAGTTCCCATGGCAACTAAGAGGGGCCATTTCCAGCCT
TAGCACTGGCTTTGGGAGGTGTCCATTGGCTGCTAATTCCATGGCAACCAGGAGTGGCAG
TTCCCTGGGCAAATGGGATACAAGTTTCCATGACGATGAAAGAGTGGGAAGAGCCAAGCT
GGAGGAGTCCCATCTTCCCCATCATTGGGCTGGCACCCCACCCCACCCCCACCTCAGGTC
AGGAGGGAGGGGTGGAGTTGGTCAATACAGTAAAGCAAGAGAGAGCCTGGGGGTGGTACA
GTCCAAACTGGGTGTCCACCGGTCCAGTCTCAGTCCAAGCTGGTCCCGTCCCCTCACACT
CCGGCTCCCCCAGGTCCGAGGTTCCCCCGGTTCAAGTAACACTTCAGTACAGATGAATGT
TCAAGTATAGTGCGGGGAGGCAGGTAGGGGGCTGGGGTACCCCTCACCACTCCCCAGGGC
CGCGCTGAACAGCGGGTAGGCCGCAGCCCCCACTCCTCACAATAGCTGCCATTGTCAGTG
ACGTTCAAGGAGTCAGGGTTGGGGGGAAGGAACTGAAATCTGAGGAGGGAGGAAGGAGAG

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               11-169, - strand, RNAz p=0.999992
               

               
               243-388, - strand, RNAz p=0.999504
               

               
               428-547, - strand, RNAz p=0.898196
               

               
               818-933, - strand, RNAz p=0.75062

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-169, - strand, RNAz p=0.999992
               

               
               243-388, - strand, RNAz p=0.999504
               

               
               428-547, - strand, RNAz p=0.898196
               

               
               818-933, - strand, RNAz p=0.75062

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               266-358, - strand, RNAmicro p=0.999058
               

               
               271-339, + strand, RNAmicro p=0.934747

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               266-358, - strand, RNAmicro p=0.999058
               

               
               271-339, + strand, RNAmicro p=0.934747

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               11-104, DB324266 NT2RI3 Homo sapiens cDNA clone NT2RI3001573 3', mRNA 
(dbj|DB324266.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, UI-CF-FN0-aep-j-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|BU608652.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, AGENCOURT_10625938 NIH_MGC_141 Homo sapiens cDNA clone (gb|BU958061.1|), 
blast E-value=1e-32, identity=94.68% 
               

               
               11-104, UI-H-DF0-bel-f-14-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone 
(gb|CA425321.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, if23c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819710.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, if23c08.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819711.1|), blast E-value=1e-32, identity=94.68%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               11-104, DB324266 NT2RI3 Homo sapiens cDNA clone NT2RI3001573 3', mRNA 
(dbj|DB324266.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, UI-CF-FN0-aep-j-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|BU608652.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, AGENCOURT_10625938 NIH_MGC_141 Homo sapiens cDNA clone (gb|BU958061.1|), 
blast E-value=1e-32, identity=94.68% 
               

               
               11-104, UI-H-DF0-bel-f-14-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone 
(gb|CA425321.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, if23c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819710.1|), blast E-value=1e-32, identity=94.68% 
               

               
               11-104, if23c08.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK819711.1|), blast E-value=1e-32, identity=94.68%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_019085, -
               

               
               3' of NM_019085, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_019085, -
               

               
               3' of NM_019085, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-960, gnl|bosTau2|chr25 (22851836-22850893)
               

               
               11-960, gnl|Hg17|chr16 (30867542-30866649)
               

               
               11-960, gnl|Mm7|chr7 (123865981-123865094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-960, gnl|bosTau2|chr25 (22851836-22850893)
               

               
               11-960, gnl|Hg17|chr16 (30867542-30866649)
               

               
               11-960, gnl|Mm7|chr7 (123865981-123865094)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	11-169, - strand, RNAz p=0.999992
	243-388, - strand, RNAz p=0.999504
	428-547, - strand, RNAz p=0.898196
	818-933, - strand, RNAz p=0.75062

	266-358, - strand, RNAmicro p=0.999058
	271-339, + strand, RNAmicro p=0.934747

	11-104, DB324266 NT2RI3 Homo sapiens cDNA clone NT2RI3001573 3', mRNA (dbj\|DB324266.1\|), blast E-value=1e-32, identity=94.68%
	11-104, UI-CF-FN0-aep-j-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|BU608652.1\|), blast E-value=1e-32, identity=94.68%
	11-104, AGENCOURT_10625938 NIH_MGC_141 Homo sapiens cDNA clone (gb\|BU958061.1\|), blast E-value=1e-32, identity=94.68%
	11-104, UI-H-DF0-bel-f-14-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone (gb\|CA425321.1\|), blast E-value=1e-32, identity=94.68%
	11-104, if23c08.x5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|CK819710.1\|), blast E-value=1e-32, identity=94.68%
	11-104, if23c08.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|CK819711.1\|), blast E-value=1e-32, identity=94.68%

	11-960, gnl\|bosTau2\|chr25 (22851836-22850893)
	11-960, gnl\|Hg17\|chr16 (30867542-30866649)
	11-960, gnl\|Mm7\|chr7 (123865981-123865094)