Non-Coding RNA Search

Ss1.1-rebs20c_j23.5

Sequence:


               
               AGACGCTTCTGCTTCCTGTTTTCACCACCCGGCCGGCCCAGCAGGCCCGACTGTTCTGCG
TCAAGATGCTCCTTTCATAGCTTCAGAATTTATTTCATGGCCAGCGGCTCCGTTGAAAAC
AGGCATTTCTTTTTATGTTGTTGACCAGACTATTTTGCTGGACTAAACTTGAAAAAAAAA
AAAAAAAAACCAACAACACAAACTGAGCAGGATGGGGGTGGGGGTGAGATGAATATTTAT
TTGATCTCAGATATTTGCATTTTTGAATAATTGGCAACCAGGGAGGCTTGCCCTCCTCGC
TGTCCAGGCTAATAAGGTTTGGAGACGAAATGTTCTAACACCCCAAGTACTTTAACTGTT
TTTGTTATGAAACTTTGCAGGGTGACATGAAGCTCTGCGGTATTTGTGAGGAGATCTGTA
AATGATGGATTTGCTCACCTCAAAATAGAACTGTAGCCGCTCCAAACTTTCCACAAGTCG
GAGCACAGTAACAGAATTCATTCAGGACTTGCTAGTTTCCTACTTGAAATGTGTTACATA
ACAGAACAGTCCCGCCTTCGCGCCTCTCAGAACTACCCATGAAGTGATGGTGAAATTTAT
CCTTAAAAGCTAGAAATAGCTTTGCTAAACTCTGGGAAAAAGATGAGTTTTTTTTTCTTC
TGATATCCCCCCCTTTTTTCACCCAAACATTGCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCTTCTGCTTCCTGTTTTCACCACCCGGCCGGCCCAGCAGGCCCGACTGTTCTGCG
TCAAGATGCTCCTTTCATAGCTTCAGAATTTATTTCATGGCCAGCGGCTCCGTTGAAAAC
AGGCATTTCTTTTTATGTTGTTGACCAGACTATTTTGCTGGACTAAACTTGAAAAAAAAA
AAAAAAAAACCAACAACACAAACTGAGCAGGATGGGGGTGGGGGTGAGATGAATATTTAT
TTGATCTCAGATATTTGCATTTTTGAATAATTGGCAACCAGGGAGGCTTGCCCTCCTCGC
TGTCCAGGCTAATAAGGTTTGGAGACGAAATGTTCTAACACCCCAAGTACTTTAACTGTT
TTTGTTATGAAACTTTGCAGGGTGACATGAAGCTCTGCGGTATTTGTGAGGAGATCTGTA
AATGATGGATTTGCTCACCTCAAAATAGAACTGTAGCCGCTCCAAACTTTCCACAAGTCG
GAGCACAGTAACAGAATTCATTCAGGACTTGCTAGTTTCCTACTTGAAATGTGTTACATA
ACAGAACAGTCCCGCCTTCGCGCCTCTCAGAACTACCCATGAAGTGATGGTGAAATTTAT
CCTTAAAAGCTAGAAATAGCTTTGCTAAACTCTGGGAAAAAGATGAGTTTTTTTTTCTTC
TGATATCCCCCCCTTTTTTCACCCAAACATTGCATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               353-472, + strand, RNAz p=0.548889
               

               
               384-497, - strand, RNAz p=0.534265

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, + strand, RNAz p=0.548889
               

               
               384-497, - strand, RNAz p=0.534265

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-684, gnl|bosTau2|chr13 (58506109-58506781)
               

               
               1-684, gnl|canFam2|chr24 (40777010-40777459)
               

               
               1-684, gnl|dasNov1|scaffold_17535 (7866-7423)
               

               
               1-684, gnl|galGal2|chr20 (12769763-12769395)
               

               
               1-684, gnl|hg17|chr20 (49644442-49644881)
               

               
               1-684, gnl|Hg17|chr20 (49645110-49644452)
               

               
               1-684, gnl|loxAfr1|scaffold_15294 (35637-36079)
               

               
               1-684, gnl|mm7|chr2 (168420982-168421438)
               

               
               1-684, gnl|Mm7|chr2 (168421634-168420993)
               

               
               1-684, gnl|monDom2|scaffold_1 (163808307-163808745)
               

               
               1-684, gnl|panTro1|chr21 (52408399-52408839)
               

               
               1-684, gnl|rheMac2|chr10 (12869917-12869477)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr13 (58506109-58506781)
               

               
               1-684, gnl|canFam2|chr24 (40777010-40777459)
               

               
               1-684, gnl|dasNov1|scaffold_17535 (7866-7423)
               

               
               1-684, gnl|galGal2|chr20 (12769763-12769395)
               

               
               1-684, gnl|hg17|chr20 (49644442-49644881)
               

               
               1-684, gnl|Hg17|chr20 (49645110-49644452)
               

               
               1-684, gnl|loxAfr1|scaffold_15294 (35637-36079)
               

               
               1-684, gnl|mm7|chr2 (168420982-168421438)
               

               
               1-684, gnl|Mm7|chr2 (168421634-168420993)
               

               
               1-684, gnl|monDom2|scaffold_1 (163808307-163808745)
               

               
               1-684, gnl|panTro1|chr21 (52408399-52408839)
               

               
               1-684, gnl|rheMac2|chr10 (12869917-12869477)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               mgm (0.180343)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               mgm (0.180343)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	353-472, + strand, RNAz p=0.548889
	384-497, - strand, RNAz p=0.534265

	1-684, gnl\|bosTau2\|chr13 (58506109-58506781)
	1-684, gnl\|canFam2\|chr24 (40777010-40777459)
	1-684, gnl\|dasNov1\|scaffold_17535 (7866-7423)
	1-684, gnl\|galGal2\|chr20 (12769763-12769395)
	1-684, gnl\|hg17\|chr20 (49644442-49644881)
	1-684, gnl\|Hg17\|chr20 (49645110-49644452)
	1-684, gnl\|loxAfr1\|scaffold_15294 (35637-36079)
	1-684, gnl\|mm7\|chr2 (168420982-168421438)
	1-684, gnl\|Mm7\|chr2 (168421634-168420993)
	1-684, gnl\|monDom2\|scaffold_1 (163808307-163808745)
	1-684, gnl\|panTro1\|chr21 (52408399-52408839)
	1-684, gnl\|rheMac2\|chr10 (12869917-12869477)