Non-Coding RNA Search

Ss1.1-rebs20c_l11.5

Sequence:


               
               CCGCCGCCGCCGCCGCCCGCCCCGCAGCCCACCATGTCTCGCCGCAAGCAAGGCAAACCC
CAGCACTTAAGCAAACGGGAATTCTCGCCCGAACCTCTTGAAGCCATTCTTACAGATGAT
GAACCAGACCACGGCCCTTTGGGAGCTCCAGAAGGGGACCATGACCTCCTCACGTGTGGG
CAGTGCCAGATGAACTTCCCATTGGGGGACATTCTTATTTTTATCGAGCACAAACGGAAA
CAATGCAATGGCAGCCTCTGCTTAGAAAAAGCTGTGGATAAGCCACCTTCCCCTTCACCA
ATCGAGATGAAAAAAGCATCCAATCCCGTGGAGGTTGGCATCCAGGTCACGCCAGAGGAT
GACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACATAGCAGAT
AAACTTCTGCACTGGAGGGGCCTCTCCTCCCCTCGTTCTGCACATGGAGCTCTAATCCCC
ACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGC
TACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCA
CAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGTCCCCTGACCCCG
CGGGTTCTTCACACACCCCCATTCGGCGTAGTACCCAGAGAGCTCAAGATGTGTGGCAGT
TTTCGGATGGAAGCTCGAGAGCCCTTAAGTTCTGAGAAAATTTGAAGCCCCCGGGGGCGG
GGGTGGACACGTGCCGCCCAGCGGACACCTGCGTGGTCTGTCATCCTGCTAGTTTGTGAT
GTTTTCTGACAGTAGCCTCCAAGAAGCCGTTGTGCGAAGACAGAGTCCTGCAGAGTCCTT
CCTGCCCGGGCCCGCAGTGCCATTTTATTTATATTTTTTAATAAAAAGTAAAAACAAAAA
AACAGACCCACATTGAAACAGTGAATCAGTCCCATATAGAGGGCCCATGGACCATCGCTG
TCCTGAGTGCCGTCCTGGCCCTTCCGAGACCAGCCAACCTAATTCCCCGTATTGTGGAAA
TGAGCATGAGTCCCCCAGACCCCTTGTTTCTATACATTCTATGTTGTCTTTTAAAAAGTG
TGCTTAACATTGACACAATAAATGTTGGAGCCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGCCGCCGCCGCCCGCCCCGCAGCCCACCATGTCTCGCCGCAAGCAAGGCAAACCC
CAGCACTTAAGCAAACGGGAATTCTCGCCCGAACCTCTTGAAGCCATTCTTACAGATGAT
GAACCAGACCACGGCCCTTTGGGAGCTCCAGAAGGGGACCATGACCTCCTCACGTGTGGG
CAGTGCCAGATGAACTTCCCATTGGGGGACATTCTTATTTTTATCGAGCACAAACGGAAA
CAATGCAATGGCAGCCTCTGCTTAGAAAAAGCTGTGGATAAGCCACCTTCCCCTTCACCA
ATCGAGATGAAAAAAGCATCCAATCCCGTGGAGGTTGGCATCCAGGTCACGCCAGAGGAT
GACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACATAGCAGAT
AAACTTCTGCACTGGAGGGGCCTCTCCTCCCCTCGTTCTGCACATGGAGCTCTAATCCCC
ACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGC
TACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCA
CAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGTCCCCTGACCCCG
CGGGTTCTTCACACACCCCCATTCGGCGTAGTACCCAGAGAGCTCAAGATGTGTGGCAGT
TTTCGGATGGAAGCTCGAGAGCCCTTAAGTTCTGAGAAAATTTGAAGCCCCCGGGGGCGG
GGGTGGACACGTGCCGCCCAGCGGACACCTGCGTGGTCTGTCATCCTGCTAGTTTGTGAT
GTTTTCTGACAGTAGCCTCCAAGAAGCCGTTGTGCGAAGACAGAGTCCTGCAGAGTCCTT
CCTGCCCGGGCCCGCAGTGCCATTTTATTTATATTTTTTAATAAAAAGTAAAAACAAAAA
AACAGACCCACATTGAAACAGTGAATCAGTCCCATATAGAGGGCCCATGGACCATCGCTG
TCCTGAGTGCCGTCCTGGCCCTTCCGAGACCAGCCAACCTAATTCCCCGTATTGTGGAAA
TGAGCATGAGTCCCCCAGACCCCTTGTTTCTATACATTCTATGTTGTCTTTTAAAAAGTG
TGCTTAACATTGACACAATAAATGTTGGAGCCTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20336313|ref|NP_612569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20336313|ref|NP_612569.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-1019, - strand, RNAz p=0.831539

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-1019, - strand, RNAz p=0.831539

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               89-423, gnl|bosTau2|chr11 (29438353-29438019)
               

               
               89-423, gnl|Hg17|chr2 (60685086-60684752)
               

               
               89-423, gnl|Mm7|chr11 (24037327-24037661)
               


               
               521-632, gnl|bosTau2|chr21 (43827267-43827156)
               

               
               521-632, gnl|Hg17|chr14 (98712285-98712174)
               

               
               521-632, gnl|Mm7|chr12 (105438864-105438753)
               


               
               663-1175, gnl|bosTau2|chr11 (29345638-29345128)
               

               
               663-1175, gnl|Hg17|chr2 (60591453-60590944)
               

               
               663-1175, gnl|Mm7|chr11 (24124704-24125200)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-423, gnl|bosTau2|chr11 (29438353-29438019)
               

               
               89-423, gnl|Hg17|chr2 (60685086-60684752)
               

               
               89-423, gnl|Mm7|chr11 (24037327-24037661)
               


               
               521-632, gnl|bosTau2|chr21 (43827267-43827156)
               

               
               521-632, gnl|Hg17|chr14 (98712285-98712174)
               

               
               521-632, gnl|Mm7|chr12 (105438864-105438753)
               


               
               663-1175, gnl|bosTau2|chr11 (29345638-29345128)
               

               
               663-1175, gnl|Hg17|chr2 (60591453-60590944)
               

               
               663-1175, gnl|Mm7|chr11 (24124704-24125200)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cst (0.420109)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

	89-423, gnl\|bosTau2\|chr11 (29438353-29438019)
	89-423, gnl\|Hg17\|chr2 (60685086-60684752)
	89-423, gnl\|Mm7\|chr11 (24037327-24037661)

	521-632, gnl\|bosTau2\|chr21 (43827267-43827156)
	521-632, gnl\|Hg17\|chr14 (98712285-98712174)
	521-632, gnl\|Mm7\|chr12 (105438864-105438753)

	663-1175, gnl\|bosTau2\|chr11 (29345638-29345128)
	663-1175, gnl\|Hg17\|chr2 (60591453-60590944)
	663-1175, gnl\|Mm7\|chr11 (24124704-24125200)

	cst (0.420109)
	ecc (0.23007)
	nlu (0.191681)
	eli (0.151814)
	pty (0.142714)
	ebs (0.118301)