Non-Coding RNA Search

Ss1.1-rebs20c_o11.5

Sequence:


               
               AAAAGCCCCGCAATCAGGCCAGGAGTCCGCGGGTGGGGCCCGGGACGCCGGGCGCCCCTC
TATACGGCTGTAGTCCTCCCGAACAAGGGGATGGAGACCGGCAGGCGCCAAGCTCCGGGC
TCCAGTGGCTCTCGGCTGCTGAGCTCCGAGTCGGTCCAGCTGGGGAAGACCCGGCGGCCG
CGGTCCGCCTGCAGGCAGAGCGCAGGGCAGGGCTGCGCGGGCCGCGGGGCACTGGGCAGA
TGCAGCGCCGACGTGTAGCCCCGGTCCAGGAAGAGTGGCTTGTAGCTGGGCGGTGGCTGT
TCCTGTTTCTCCGCGCTGTCGCGGCGGCTCAGAAAGGGCGTGACGATCTTGCGGTAGAGG
CCGCGCGTGTCCGTGAGCACCTCGCTGTAGGGCGGCGGCGGCTCAGCCATCAGCACCGCC
TCTTCGTAGCACGGTGGCTTAGACATGTCCGATTCCGCTTGGCGCGGGTAGCTCCAGGGT
CGCGGCGGCACTGAGAGGTGCGGCTGCGGCGGCGGGTGCGGAAGCGCGTGGTGGTGTGCG
TGCGGGTGCGCGTGCGGCTGCGTCGGCCCGTGATGCAGCAGCGGGTGCACGTGCACGTGC
TGATGGCCGTGCGCCGGCGCCTCGAGGCGGCCGCGGTGCGGTGGTGGCGGCGGTGCTAGG
CCCGGGGGGCTCCCGGCCAGACTACCCTCGAGCTCGAGGGGTTCCAGCTCAAGAGCGCGC
AGGTTCTGCTCACGCAGTCGCTCCTCCTGGCGCCGCTTGAGGCGGCGCCGCAGGAAGCTG
CAGAAGCAGCACAGTAGGACGATGAGACCCCAGATGAGCCAAAAACCGGCAAAGCACGTG
AGGAACGTGTAGGTGCCCTGGGACATAACCATGGCGGCGACGCGAGCGGCGGTCCTCTGC
TGCTTCACTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCCCCGCAATCAGGCCAGGAGTCCGCGGGTGGGGCCCGGGACGCCGGGCGCCCCTC
TATACGGCTGTAGTCCTCCCGAACAAGGGGATGGAGACCGGCAGGCGCCAAGCTCCGGGC
TCCAGTGGCTCTCGGCTGCTGAGCTCCGAGTCGGTCCAGCTGGGGAAGACCCGGCGGCCG
CGGTCCGCCTGCAGGCAGAGCGCAGGGCAGGGCTGCGCGGGCCGCGGGGCACTGGGCAGA
TGCAGCGCCGACGTGTAGCCCCGGTCCAGGAAGAGTGGCTTGTAGCTGGGCGGTGGCTGT
TCCTGTTTCTCCGCGCTGTCGCGGCGGCTCAGAAAGGGCGTGACGATCTTGCGGTAGAGG
CCGCGCGTGTCCGTGAGCACCTCGCTGTAGGGCGGCGGCGGCTCAGCCATCAGCACCGCC
TCTTCGTAGCACGGTGGCTTAGACATGTCCGATTCCGCTTGGCGCGGGTAGCTCCAGGGT
CGCGGCGGCACTGAGAGGTGCGGCTGCGGCGGCGGGTGCGGAAGCGCGTGGTGGTGTGCG
TGCGGGTGCGCGTGCGGCTGCGTCGGCCCGTGATGCAGCAGCGGGTGCACGTGCACGTGC
TGATGGCCGTGCGCCGGCGCCTCGAGGCGGCCGCGGTGCGGTGGTGGCGGCGGTGCTAGG
CCCGGGGGGCTCCCGGCCAGACTACCCTCGAGCTCGAGGGGTTCCAGCTCAAGAGCGCGC
AGGTTCTGCTCACGCAGTCGCTCCTCCTGGCGCCGCTTGAGGCGGCGCCGCAGGAAGCTG
CAGAAGCAGCACAGTAGGACGATGAGACCCCAGATGAGCCAAAAACCGGCAAAGCACGTG
AGGAACGTGTAGGTGCCCTGGGACATAACCATGGCGGCGACGCGAGCGGCGGTCCTCTGC
TGCTTCACTGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51767704|ref|XP_484263.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51767704|ref|XP_484263.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-459, gnl|bosTau2|chr7 (21728926-21728469)
               

               
               1-459, gnl|Hg17|chr5 (176815787-176815329)
               

               
               1-459, gnl|Mm7|chr13 (54553530-54553072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr7 (21728926-21728469)
               

               
               1-459, gnl|Hg17|chr5 (176815787-176815329)
               

               
               1-459, gnl|Mm7|chr13 (54553530-54553072)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-459, gnl\|bosTau2\|chr7 (21728926-21728469)
	1-459, gnl\|Hg17\|chr5 (176815787-176815329)
	1-459, gnl\|Mm7\|chr13 (54553530-54553072)