Non-Coding RNA Search

Ss1.1-rebs21c_f12.5

Sequence:


               
               TCACATGCAGCTGTACCCCGGCTGGTCCGCACGGGATAACTATGGGAAAAAGAAGAAGAG
GAAAAGGGACAAGCAGCCCGGGGAGACCAATGACCTGAGCGCTCCTAAGAAATGCCGAGC
GCGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAGGAGAAAAAAAAAGTG
CGTTCGCTACATACAAGGTGAAGGCAGCTGCCTCAGTCCACCCTCTTCAGATGGAAGCTT
ACTAGACTCGCCTCCTTCCTCCCCCCACCTGCTAGGCTCCCCTCCCCAAGACGCCAAGTC
ACAGACTGAGCAGACCCAGCCTCTGTCGCTGTCCCTGAAGCCCGACCCCCTGGCCCACCT
GTCCATGATGCCTCCGCCGCCCGCCCTCCTGCTGGCCGAGGCCGCCCACGGCAAGGCCCC
CGCCCTCTGTGCCAACGGGGCCCTGGACCTGCCTCCCGCCGCCCTGCAGGCCCCCCTCCT
CCCCTCCTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACATGCAGCTGTACCCCGGCTGGTCCGCACGGGATAACTATGGGAAAAAGAAGAAGAG
GAAAAGGGACAAGCAGCCCGGGGAGACCAATGACCTGAGCGCTCCTAAGAAATGCCGAGC
GCGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAGGAGAAAAAAAAAGTG
CGTTCGCTACATACAAGGTGAAGGCAGCTGCCTCAGTCCACCCTCTTCAGATGGAAGCTT
ACTAGACTCGCCTCCTTCCTCCCCCCACCTGCTAGGCTCCCCTCCCCAAGACGCCAAGTC
ACAGACTGAGCAGACCCAGCCTCTGTCGCTGTCCCTGAAGCCCGACCCCCTGGCCCACCT
GTCCATGATGCCTCCGCCGCCCGCCCTCCTGCTGGCCGAGGCCGCCCACGGCAAGGCCCC
CGCCCTCTGTGCCAACGGGGCCCTGGACCTGCCTCCCGCCGCCCTGCAGGCCCCCCTCCT
CCCCTCCTCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57162523|emb|CAI40407.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57162523|emb|CAI40407.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-322, - strand, RNAz p=0.657904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-322, - strand, RNAz p=0.657904

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               164-492, gnl|bosTau2|chr26 (22521079-22521407)
               

               
               164-492, gnl|Hg17|chr10 (114915302-114915624)
               

               
               164-492, gnl|Mm7|chr19 (55846408-55846736)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-492, gnl|bosTau2|chr26 (22521079-22521407)
               

               
               164-492, gnl|Hg17|chr10 (114915302-114915624)
               

               
               164-492, gnl|Mm7|chr19 (55846408-55846736)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               pla (0.133672)

	164-492, gnl\|bosTau2\|chr26 (22521079-22521407)
	164-492, gnl\|Hg17\|chr10 (114915302-114915624)
	164-492, gnl\|Mm7\|chr19 (55846408-55846736)