Non-Coding RNA Search

Ss1.1-rebs21c_l18.5

Sequence:


               
               CGAGACCGCAAAACTATTCCAATAAAGTATCCTTTGAAAGAAATTGTAGTTATCCATCAG
GATCCAGAAGCTCTTGATGAAATCAAGTCTTTGGAGAAGTATATCATTGAGGAATTGAAT
GTTCGAAAAGTTACACTGTCTACAGATAAAAACAAGTATGGCATTCACCTCAGGGCAGAA
CCAGATCACATGGTCCTGGGGAAGCGTCTGAAGGGAGCCTTCAAGATGGTGATGACGTCC
ATCAAGCAGCTGAGCAGTGAGGAGCTGGAGTGGTTCCAGGAGAGTGGGACCATCGTTGTG
GAAGGCCACGAATTGCATGAAGAAGATATCCGCCTCATGTACACCTTTGATCAGGCAGCA
GGTGGAACGACACAGTTTGAAGCACACTCAGATGCTCAGGTGTTGGTTCTCTTAGATGTC
ACCCCTGACCAGTCAATGGTGGATGAAGGAATGGCTCGGGAAGTTATCAATCGCATCCAG
AAACTTCGCAAAAAGTGCAATCTGGTTCCAACTGATGAAATAACAGTTTATTATAAAGCA
AAATCCGAAGGAGAGTATCTGAATAATGTTATCAAAAGCCACACAGAGTTCATATTTGCT
ACCATAAAGGCTCCCTTGAAACCATATCCAGTTCCTACATCAGATAAAATCCTTATTCAA
GAAAAAATGCAGTTAAAAGGATCTGACCTGGAAGTTACACTAACCAGAGGATCATCCATG
CCTGCCCCTGCTTGTGCGTATGTCAATCTTAACATTTGTACAAATGGCAGTGAACAAGGT
GGCGTATTGCTTCTGGAAAATCCAAAAGGCGATAATAGATTGGACCTTTTAAAGCTGAAG
AGTGTTGTTACTAGCATTTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGACCGCAAAACTATTCCAATAAAGTATCCTTTGAAAGAAATTGTAGTTATCCATCAG
GATCCAGAAGCTCTTGATGAAATCAAGTCTTTGGAGAAGTATATCATTGAGGAATTGAAT
GTTCGAAAAGTTACACTGTCTACAGATAAAAACAAGTATGGCATTCACCTCAGGGCAGAA
CCAGATCACATGGTCCTGGGGAAGCGTCTGAAGGGAGCCTTCAAGATGGTGATGACGTCC
ATCAAGCAGCTGAGCAGTGAGGAGCTGGAGTGGTTCCAGGAGAGTGGGACCATCGTTGTG
GAAGGCCACGAATTGCATGAAGAAGATATCCGCCTCATGTACACCTTTGATCAGGCAGCA
GGTGGAACGACACAGTTTGAAGCACACTCAGATGCTCAGGTGTTGGTTCTCTTAGATGTC
ACCCCTGACCAGTCAATGGTGGATGAAGGAATGGCTCGGGAAGTTATCAATCGCATCCAG
AAACTTCGCAAAAAGTGCAATCTGGTTCCAACTGATGAAATAACAGTTTATTATAAAGCA
AAATCCGAAGGAGAGTATCTGAATAATGTTATCAAAAGCCACACAGAGTTCATATTTGCT
ACCATAAAGGCTCCCTTGAAACCATATCCAGTTCCTACATCAGATAAAATCCTTATTCAA
GAAAAAATGCAGTTAAAAGGATCTGACCTGGAAGTTACACTAACCAGAGGATCATCCATG
CCTGCCCCTGCTTGTGCGTATGTCAATCTTAACATTTGTACAAATGGCAGTGAACAAGGT
GGCGTATTGCTTCTGGAAAATCCAAAAGGCGATAATAGATTGGACCTTTTAAAGCTGAAG
AGTGTTGTTACTAGCATTTTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55957313|emb|CAI16199.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55957313|emb|CAI16199.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               126-245, + strand, RNAz p=0.714263

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-245, + strand, RNAz p=0.714263

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of D28473, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of D28473, +

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               87-287, gnl|bosTau2|chr8 (46752949-46753149)
               

               
               87-287, gnl|canFam2|chr1 (102162973-102162731)
               

               
               87-287, gnl|danRer3|chr11 (376320-376517)
               

               
               87-287, gnl|dasNov1|scaffold_68356 (168-409)
               

               
               87-287, gnl|fr1|chrUn (31811254-31811445)
               

               
               87-287, gnl|galGal2|chr12 (3637842-3637619)
               

               
               87-287, gnl|hg17|chr9 (92089198-92089440)
               

               
               87-287, gnl|Hg17|chr9 (92089413-92089213)
               

               
               87-287, gnl|loxAfr1|scaffold_13454 (38583-38817)
               

               
               87-287, gnl|mm7|chr13 (49208681-49208445)
               

               
               87-287, gnl|Mm7|chr13 (49208470-49208670)
               

               
               87-287, gnl|monDom2|scaffold_237 (476164-476369)
               

               
               87-287, gnl|oryCun1|scaffold_183275 (52601-52833)
               

               
               87-287, gnl|panTro1|chrUn_random (27644294-27644536)
               

               
               87-287, gnl|rheMac2|chr15 (104150253-104150495)
               

               
               87-287, gnl|rn3|chr17 (20905744-20905981)
               

               
               87-287, gnl|tetNig1|chr11 (3629278-3629074)
               

               
               87-287, gnl|xenTro1|scaffold_425 (214779-214985)
               


               
               494-676, gnl|bosTau2|chr8 (46761575-46761757)
               

               
               494-676, gnl|Hg17|chr9 (92084169-92083987)
               

               
               494-676, gnl|Mm7|chr13 (49211002-49211184)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-287, gnl|bosTau2|chr8 (46752949-46753149)
               

               
               87-287, gnl|canFam2|chr1 (102162973-102162731)
               

               
               87-287, gnl|danRer3|chr11 (376320-376517)
               

               
               87-287, gnl|dasNov1|scaffold_68356 (168-409)
               

               
               87-287, gnl|fr1|chrUn (31811254-31811445)
               

               
               87-287, gnl|galGal2|chr12 (3637842-3637619)
               

               
               87-287, gnl|hg17|chr9 (92089198-92089440)
               

               
               87-287, gnl|Hg17|chr9 (92089413-92089213)
               

               
               87-287, gnl|loxAfr1|scaffold_13454 (38583-38817)
               

               
               87-287, gnl|mm7|chr13 (49208681-49208445)
               

               
               87-287, gnl|Mm7|chr13 (49208470-49208670)
               

               
               87-287, gnl|monDom2|scaffold_237 (476164-476369)
               

               
               87-287, gnl|oryCun1|scaffold_183275 (52601-52833)
               

               
               87-287, gnl|panTro1|chrUn_random (27644294-27644536)
               

               
               87-287, gnl|rheMac2|chr15 (104150253-104150495)
               

               
               87-287, gnl|rn3|chr17 (20905744-20905981)
               

               
               87-287, gnl|tetNig1|chr11 (3629278-3629074)
               

               
               87-287, gnl|xenTro1|scaffold_425 (214779-214985)
               


               
               494-676, gnl|bosTau2|chr8 (46761575-46761757)
               

               
               494-676, gnl|Hg17|chr9 (92084169-92083987)
               

               
               494-676, gnl|Mm7|chr13 (49211002-49211184)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)

	87-287, gnl\|bosTau2\|chr8 (46752949-46753149)
	87-287, gnl\|canFam2\|chr1 (102162973-102162731)
	87-287, gnl\|danRer3\|chr11 (376320-376517)
	87-287, gnl\|dasNov1\|scaffold_68356 (168-409)
	87-287, gnl\|fr1\|chrUn (31811254-31811445)
	87-287, gnl\|galGal2\|chr12 (3637842-3637619)
	87-287, gnl\|hg17\|chr9 (92089198-92089440)
	87-287, gnl\|Hg17\|chr9 (92089413-92089213)
	87-287, gnl\|loxAfr1\|scaffold_13454 (38583-38817)
	87-287, gnl\|mm7\|chr13 (49208681-49208445)
	87-287, gnl\|Mm7\|chr13 (49208470-49208670)
	87-287, gnl\|monDom2\|scaffold_237 (476164-476369)
	87-287, gnl\|oryCun1\|scaffold_183275 (52601-52833)
	87-287, gnl\|panTro1\|chrUn_random (27644294-27644536)
	87-287, gnl\|rheMac2\|chr15 (104150253-104150495)
	87-287, gnl\|rn3\|chr17 (20905744-20905981)
	87-287, gnl\|tetNig1\|chr11 (3629278-3629074)
	87-287, gnl\|xenTro1\|scaffold_425 (214779-214985)

	494-676, gnl\|bosTau2\|chr8 (46761575-46761757)
	494-676, gnl\|Hg17\|chr9 (92084169-92083987)
	494-676, gnl\|Mm7\|chr13 (49211002-49211184)