Ss1.1-rebs21c_o17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGCTCCAGTGTTTAGGTTCTCTTTGCGGCTGTTCAAGATGAACCGATTCTTCGGGAAA GCGAAACCCAAGGCTCCGCCGCCCAGCTTGACCGACTGCATTGGCACGGTGGACAGCAGG GCAGAATCCATTGACAAGAAGATTTCTCGCCTGGATGCTGAGCTAGTGAAGTATAAGGAT CAGATCAAAAAGATGAGAGAGGGTCCTGCAAAGAATATGGTCAAGCAGAAAGCCTTGCGG GTTTTAAAGCAAAAGCGGATGTATGAGCAGCAGCGGGACAATCTCGCCCAGCAGTCATTT AACATGGAACAAGCCAATTACACCATCCAGTCATTGAAGGACACCAAGACCACGGTCGAC GCTATGAAACTGGGAGTAAAGGAGATGAAGAAAGCATATAAGCAAGTGAAAATCGACCAG ATTGAGGATCTACAGGACCAGCTAGAAGATATGATGGAAGATGCAAATGAAATCCAAGAA GCACTGAGTCGTAGTTATGGCACGCCAGAATTAGACGAAGATGACCTAGAAGCGGAATTG GATGCACTAGGTGATGAACTTCTGGCTGATGAAGACAGTTCTTATTTGGATGAAGCAGCA GCTGCACCTGCAATTCCAGAAGGTGTTCCCACTGACACAAAGAATAAGGATGGAGTCCTG GTGGATGAATTTGGATTGCCACAGATCCCTGCTTCGTAGACATGCACCATTCAAGTATAT CATGTAAAATAAATACATATTCTGGGATATTTATCTTTCCAAATTTGCCATAACAGTTTC AGATTCCTTTATTCTCTTTGGAGGAAAAGTTAATTACATTGCTTTTGTTTTTTTTCTGTT AAGAGACTCATTGCTTGGAGAAGGCTTTCTTCATACTAAATTTGTATTCCTTTTCTCTTA CAAAAGACTAACTTACTTAAAATTATCATTGAGGATGTATGTATGACTCCATTACTTAGT AGTACTTGTGGAATAAAACCAAGAGAATGTGGATGTTTAAGCTCCATGACAGCATATCTC CACAGTCTCGGATTGACCTGATAAACTGATAAAACAAAATTGAAATTAGTGAGACTGTCC ATATTATGATTCAAAACCATTTTCTTTCGTGGTATTATAGGTTGGTTAAAGTGATGGCCT TTTTTGGTGACTTTGTTGTATCTTGTGAGTAAATCATTACTGTGTCGGATATTGGAATGG AATTATCACTACTGTATCATGAGTGGATATTTTGATTCTATGGTTGCTTCAGTATTACAG CTGACTTGTAATCAATAATGAATATTTCTTGATATTTAATGTATAGGACATTTATTTATA CTCAATAAATATTTTTCAAAAGGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGCTCCAGTGTTTAGGTTCTCTTTGCGGCTGTTCAAGATGAACCGATTCTTCGGGAAA GCGAAACCCAAGGCTCCGCCGCCCAGCTTGACCGACTGCATTGGCACGGTGGACAGCAGG GCAGAATCCATTGACAAGAAGATTTCTCGCCTGGATGCTGAGCTAGTGAAGTATAAGGAT CAGATCAAAAAGATGAGAGAGGGTCCTGCAAAGAATATGGTCAAGCAGAAAGCCTTGCGG GTTTTAAAGCAAAAGCGGATGTATGAGCAGCAGCGGGACAATCTCGCCCAGCAGTCATTT AACATGGAACAAGCCAATTACACCATCCAGTCATTGAAGGACACCAAGACCACGGTCGAC GCTATGAAACTGGGAGTAAAGGAGATGAAGAAAGCATATAAGCAAGTGAAAATCGACCAG ATTGAGGATCTACAGGACCAGCTAGAAGATATGATGGAAGATGCAAATGAAATCCAAGAA GCACTGAGTCGTAGTTATGGCACGCCAGAATTAGACGAAGATGACCTAGAAGCGGAATTG GATGCACTAGGTGATGAACTTCTGGCTGATGAAGACAGTTCTTATTTGGATGAAGCAGCA GCTGCACCTGCAATTCCAGAAGGTGTTCCCACTGACACAAAGAATAAGGATGGAGTCCTG GTGGATGAATTTGGATTGCCACAGATCCCTGCTTCGTAGACATGCACCATTCAAGTATAT CATGTAAAATAAATACATATTCTGGGATATTTATCTTTCCAAATTTGCCATAACAGTTTC AGATTCCTTTATTCTCTTTGGAGGAAAAGTTAATTACATTGCTTTTGTTTTTTTTCTGTT AAGAGACTCATTGCTTGGAGAAGGCTTTCTTCATACTAAATTTGTATTCCTTTTCTCTTA CAAAAGACTAACTTACTTAAAATTATCATTGAGGATGTATGTATGACTCCATTACTTAGT AGTACTTGTGGAATAAAACCAAGAGAATGTGGATGTTTAAGCTCCATGACAGCATATCTC CACAGTCTCGGATTGACCTGATAAACTGATAAAACAAAATTGAAATTAGTGAGACTGTCC ATATTATGATTCAAAACCATTTTCTTTCGTGGTATTATAGGTTGGTTAAAGTGATGGCCT TTTTTGGTGACTTTGTTGTATCTTGTGAGTAAATCATTACTGTGTCGGATATTGGAATGG AATTATCACTACTGTATCATGAGTGGATATTTTGATTCTATGGTTGCTTCAGTATTACAG CTGACTTGTAATCAATAATGAATATTTCTTGATATTTAATGTATAGGACATTTATTTATA CTCAATAAATATTTTTCAAAAGGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr8 (40365136-40365250) | |
| 1-115, gnl|canFam2|chr11 (53394226-53394124) | |
| 1-115, gnl|canFam2|chr11 (53394226-53394149) | |
| 1-115, gnl|danRer3|chr2 (22828955-22828785) | |
| 1-115, gnl|danRer3|chrUn (174105453-174105519) | |
| 1-115, gnl|dasNov1|scaffold_161640 (1285-1366) | |
| 1-115, gnl|dasNov1|scaffold_5711 (42877-42954) | |
| 1-115, gnl|echTel1|scaffold_318519 (54246-54347) | |
| 1-115, gnl|echTel1|scaffold_318519 (54246-54323) | |
| 1-115, gnl|fr1|chrUn (3102066-3102138) | |
| 1-115, gnl|fr1|chrUn (3102066-3102138) | |
| 1-115, gnl|hg17|chr1 (200506978-200507078) | |
| 1-115, gnl|Hg17|chr9 (33255039-33255152) | |
| 1-115, gnl|hg17|chrX (46341436-46341513) | |
| 1-115, gnl|loxAfr1|scaffold_14602 (63146-63247) | |
| 1-115, gnl|loxAfr1|scaffold_14602 (63146-63223) | |
| 1-115, gnl|mm7|chr16 (54914898-54914770) | |
| 1-115, gnl|mm7|chr16 (54914898-54914794) | |
| 1-115, gnl|Mm7|chr4 (41087033-41087146) | |
| 1-115, gnl|monDom2|scaffold_35 (20758313-20758402) | |
| 1-115, gnl|monDom2|scaffold_35 (20758313-20758408) | |
| 1-115, gnl|oryCun1|scaffold_209829 (192798-192697) | |
| 1-115, gnl|oryCun1|scaffold_209829 (192798-192721) | |
| 1-115, gnl|panTro1|chr1 (183441337-183441437) | |
| 1-115, gnl|panTro1|chrX (47912415-47912492) | |
| 1-115, gnl|rheMac2|chr1 (166619837-166619737) | |
| 1-115, gnl|rheMac2|chrX (44551836-44551913) | |
| 1-115, gnl|rn3|chr12 (23073108-23073210) | |
| 1-115, gnl|rn3|chr12 (23073108-23073186) | |
| 1-115, gnl|tetNig1|chr6 (4557259-4557327) | |
| 425-533, gnl|bosTau2|chr8 (40374643-40374751) | |
| 425-533, gnl|canFam2|chr11 (53402341-53402235) | |
| 425-533, gnl|canFam2|chr11 (53402232-53402348) | |
| 425-533, gnl|danRer3|chr2 (22832147-22832039) | |
| 425-533, gnl|danRer3|chrUn (174100124-174100008) | |
| 425-533, gnl|dasNov1|scaffold_89800 (39041-38933) | |
| 425-533, gnl|dasNov1|scaffold_89800 (38932-39040) | |
| 425-533, gnl|echTel1|scaffold_318519 (46274-46158) | |
| 425-533, gnl|echTel1|scaffold_69244 (5425-5533) | |
| 425-533, gnl|fr1|chrUn (3100734-3100842) | |
| 425-533, gnl|fr1|chrUn (3100843-3100727) | |
| 425-533, gnl|galGal2|chr2 (85561490-85561369) | |
| 425-533, gnl|hg17|chr9 (33266453-33266569) | |
| 425-533, gnl|Hg17|chr9 (33266452-33266560) | |
| 425-533, gnl|hg17|chrX (46341014-46341122) | |
| 425-533, gnl|mm7|chr16 (54915320-54915213) | |
| 425-533, gnl|mm7|chr4 (41097352-41097468) | |
| 425-533, gnl|Mm7|chr4 (41097351-41097459) | |
| 425-533, gnl|monDom2|scaffold_35 (20757895-20758003) | |
| 425-533, gnl|monDom2|scaffold_83 (5362018-5361902) | |
| 425-533, gnl|oryCun1|scaffold_204878 (47213-47108) | |
| 425-533, gnl|oryCun1|scaffold_204878 (47105-47221) | |
| 425-533, gnl|panTro1|chr11 (33764002-33764118) | |
| 425-533, gnl|panTro1|chrX (47911993-47912101) | |
| 425-533, gnl|rheMac2|chr15 (43950180-43950064) | |
| 425-533, gnl|rheMac2|chrX (44551425-44551522) | |
| 425-533, gnl|rn3|chr12 (23072643-23072749) | |
| 425-533, gnl|rn3|chr5 (58353745-58353861) | |
| 425-533, gnl|tetNig1|chrUn_random (16874117-16874009) | |
| 425-533, gnl|tetNig1|chrUn_random (16874008-16874124) | |
| 425-533, gnl|xenTro1|scaffold_873 (451839-451723) | |
| 535-649, gnl|bosTau2|chr8 (40377118-40377232) | |
| 535-649, gnl|canFam2|chr11 (53404452-53404342) | |
| 535-649, gnl|danRer3|chr2 (22832332-22832223) | |
| 535-649, gnl|dasNov1|scaffold_89800 (39156-39043) | |
| 535-649, gnl|echTel1|scaffold_69244 (5310-5423) | |
| 535-649, gnl|fr1|chrUn (255951671-255951577) | |
| 535-649, gnl|hg17|chr1 (200506454-200506563) | |
| 535-649, gnl|Hg17|chr9 (33268110-33268224) | |
| 535-649, gnl|loxAfr1|scaffold_230306 (496-609) | |
| 535-649, gnl|mm7|chr16 (54915513-54915321) | |
| 535-649, gnl|Mm7|chr4 (41099321-41099435) | |
| 535-649, gnl|monDom2|scaffold_35 (20757780-20757893) | |
| 535-649, gnl|oryCun1|scaffold_204878 (49068-48955) | |
| 535-649, gnl|panTro1|chr1 (183440812-183440922) | |
| 535-649, gnl|rheMac2|chr1 (166620370-166620255) | |
| 535-649, gnl|rn3|chr12 (23072527-23072642) | |
| 535-649, gnl|tetNig1|chrUn_random (16874634-16874525) | |
| 1241-1356, gnl|bosTau2|chr16 (4942928-4943043) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr8 (40365136-40365250) | |
| 1-115, gnl|canFam2|chr11 (53394226-53394124) | |
| 1-115, gnl|canFam2|chr11 (53394226-53394149) | |
| 1-115, gnl|danRer3|chr2 (22828955-22828785) | |
| 1-115, gnl|danRer3|chrUn (174105453-174105519) | |
| 1-115, gnl|dasNov1|scaffold_161640 (1285-1366) | |
| 1-115, gnl|dasNov1|scaffold_5711 (42877-42954) | |
| 1-115, gnl|echTel1|scaffold_318519 (54246-54347) | |
| 1-115, gnl|echTel1|scaffold_318519 (54246-54323) | |
| 1-115, gnl|fr1|chrUn (3102066-3102138) | |
| 1-115, gnl|fr1|chrUn (3102066-3102138) | |
| 1-115, gnl|hg17|chr1 (200506978-200507078) | |
| 1-115, gnl|Hg17|chr9 (33255039-33255152) | |
| 1-115, gnl|hg17|chrX (46341436-46341513) | |
| 1-115, gnl|loxAfr1|scaffold_14602 (63146-63247) | |
| 1-115, gnl|loxAfr1|scaffold_14602 (63146-63223) | |
| 1-115, gnl|mm7|chr16 (54914898-54914770) | |
| 1-115, gnl|mm7|chr16 (54914898-54914794) | |
| 1-115, gnl|Mm7|chr4 (41087033-41087146) | |
| 1-115, gnl|monDom2|scaffold_35 (20758313-20758402) | |
| 1-115, gnl|monDom2|scaffold_35 (20758313-20758408) | |
| 1-115, gnl|oryCun1|scaffold_209829 (192798-192697) | |
| 1-115, gnl|oryCun1|scaffold_209829 (192798-192721) | |
| 1-115, gnl|panTro1|chr1 (183441337-183441437) | |
| 1-115, gnl|panTro1|chrX (47912415-47912492) | |
| 1-115, gnl|rheMac2|chr1 (166619837-166619737) | |
| 1-115, gnl|rheMac2|chrX (44551836-44551913) | |
| 1-115, gnl|rn3|chr12 (23073108-23073210) | |
| 1-115, gnl|rn3|chr12 (23073108-23073186) | |
| 1-115, gnl|tetNig1|chr6 (4557259-4557327) | |
| 425-533, gnl|bosTau2|chr8 (40374643-40374751) | |
| 425-533, gnl|canFam2|chr11 (53402341-53402235) | |
| 425-533, gnl|canFam2|chr11 (53402232-53402348) | |
| 425-533, gnl|danRer3|chr2 (22832147-22832039) | |
| 425-533, gnl|danRer3|chrUn (174100124-174100008) | |
| 425-533, gnl|dasNov1|scaffold_89800 (39041-38933) | |
| 425-533, gnl|dasNov1|scaffold_89800 (38932-39040) | |
| 425-533, gnl|echTel1|scaffold_318519 (46274-46158) | |
| 425-533, gnl|echTel1|scaffold_69244 (5425-5533) | |
| 425-533, gnl|fr1|chrUn (3100734-3100842) | |
| 425-533, gnl|fr1|chrUn (3100843-3100727) | |
| 425-533, gnl|galGal2|chr2 (85561490-85561369) | |
| 425-533, gnl|hg17|chr9 (33266453-33266569) | |
| 425-533, gnl|Hg17|chr9 (33266452-33266560) | |
| 425-533, gnl|hg17|chrX (46341014-46341122) | |
| 425-533, gnl|mm7|chr16 (54915320-54915213) | |
| 425-533, gnl|mm7|chr4 (41097352-41097468) | |
| 425-533, gnl|Mm7|chr4 (41097351-41097459) | |
| 425-533, gnl|monDom2|scaffold_35 (20757895-20758003) | |
| 425-533, gnl|monDom2|scaffold_83 (5362018-5361902) | |
| 425-533, gnl|oryCun1|scaffold_204878 (47213-47108) | |
| 425-533, gnl|oryCun1|scaffold_204878 (47105-47221) | |
| 425-533, gnl|panTro1|chr11 (33764002-33764118) | |
| 425-533, gnl|panTro1|chrX (47911993-47912101) | |
| 425-533, gnl|rheMac2|chr15 (43950180-43950064) | |
| 425-533, gnl|rheMac2|chrX (44551425-44551522) | |
| 425-533, gnl|rn3|chr12 (23072643-23072749) | |
| 425-533, gnl|rn3|chr5 (58353745-58353861) | |
| 425-533, gnl|tetNig1|chrUn_random (16874117-16874009) | |
| 425-533, gnl|tetNig1|chrUn_random (16874008-16874124) | |
| 425-533, gnl|xenTro1|scaffold_873 (451839-451723) | |
| 535-649, gnl|bosTau2|chr8 (40377118-40377232) | |
| 535-649, gnl|canFam2|chr11 (53404452-53404342) | |
| 535-649, gnl|danRer3|chr2 (22832332-22832223) | |
| 535-649, gnl|dasNov1|scaffold_89800 (39156-39043) | |
| 535-649, gnl|echTel1|scaffold_69244 (5310-5423) | |
| 535-649, gnl|fr1|chrUn (255951671-255951577) | |
| 535-649, gnl|hg17|chr1 (200506454-200506563) | |
| 535-649, gnl|Hg17|chr9 (33268110-33268224) | |
| 535-649, gnl|loxAfr1|scaffold_230306 (496-609) | |
| 535-649, gnl|mm7|chr16 (54915513-54915321) | |
| 535-649, gnl|Mm7|chr4 (41099321-41099435) | |
| 535-649, gnl|monDom2|scaffold_35 (20757780-20757893) | |
| 535-649, gnl|oryCun1|scaffold_204878 (49068-48955) | |
| 535-649, gnl|panTro1|chr1 (183440812-183440922) | |
| 535-649, gnl|rheMac2|chr1 (166620370-166620255) | |
| 535-649, gnl|rn3|chr12 (23072527-23072642) | |
| 535-649, gnl|tetNig1|chrUn_random (16874634-16874525) | |
| 1241-1356, gnl|bosTau2|chr16 (4942928-4943043) |
| Expressed library(ies): 52 entry(ies) | More info |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
| fco (2.0437) | |
| liv (1.31656) | |
| cbe (0.956938) | |
| lin (0.873617) | |
| tra (0.61546) | |
| isp (0.601504) | |
| bfe (0.599431) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| pro (0.512033) | |
| mga (0.480615) | |
| spl (0.429553) | |
| amn (0.417711) | |
| cty (0.41632) | |
| kid (0.389206) | |
| ldo (0.38801) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| ecc (0.345105) | |
| spc (0.340097) | |
| cje (0.330469) | |
| csk (0.281492) | |
| fce (0.271592) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (2.0437) | |
| liv (1.31656) | |
| cbe (0.956938) | |
| lin (0.873617) | |
| tra (0.61546) | |
| isp (0.601504) | |
| bfe (0.599431) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| pro (0.512033) | |
| mga (0.480615) | |
| spl (0.429553) | |
| amn (0.417711) | |
| cty (0.41632) | |
| kid (0.389206) | |
| ldo (0.38801) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| ecc (0.345105) | |
| spc (0.340097) | |
| cje (0.330469) | |
| csk (0.281492) | |
| fce (0.271592) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) |