Non-Coding RNA Search

Ss1.1-rebs22c_h2.5

Sequence:


               
               TATTTTTAATTTTCTACACATTTGAGCTGAGTCATGAGAGACTTAGCTTCCCTCTCCTCC
CCTTCCTGCGATTTCTGCCCACCTTCTCCCCCCCATCTCCCCAGGCCCACCCACAGGCTC
AGAGCCCTGAGATTCCATTTTCTGATTTGTTTGGGGAATTTTTTTTAAAAAAGATGTTAC
ACGGTGTTTCAAAGCCAGCAAGTTACCACCCTCCGGTGTCTCTTCTCTCCACATCTGTAA
CTTCTTTTTCCAGGTTTTATTTTCAGTTTTAAATTCCTAATAAATTATTTGAAAATGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTTAATTTTCTACACATTTGAGCTGAGTCATGAGAGACTTAGCTTCCCTCTCCTCC
CCTTCCTGCGATTTCTGCCCACCTTCTCCCCCCCATCTCCCCAGGCCCACCCACAGGCTC
AGAGCCCTGAGATTCCATTTTCTGATTTGTTTGGGGAATTTTTTTTAAAAAAGATGTTAC
ACGGTGTTTCAAAGCCAGCAAGTTACCACCCTCCGGTGTCTCTTCTCTCCACATCTGTAA
CTTCTTTTTCCAGGTTTTATTTTCAGTTTTAAATTCCTAATAAATTATTTGAAAATGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-269, - strand, RNAz p=0.963998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-269, - strand, RNAz p=0.963998

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-300, gnl|bosTau2|chr2 (70395823-70396104)
               

               
               1-300, gnl|canFam2|chr26 (19292485-19292867)
               

               
               1-300, gnl|echTel1|scaffold_242984 (3119-2747)
               

               
               1-300, gnl|galGal2|chr15 (9292067-9291695)
               

               
               1-300, gnl|hg17|chr11 (73079263-73079606)
               

               
               1-300, gnl|Hg17|chr12 (119242134-119241852)
               

               
               1-300, gnl|loxAfr1|scaffold_43583 (42675-43011)
               

               
               1-300, gnl|mm7|chr5 (114676530-114676147)
               

               
               1-300, gnl|Mm7|chr5 (114676235-114676528)
               

               
               1-300, gnl|monDom2|scaffold_145 (2057388-2057053)
               

               
               1-300, gnl|panTro1|chr9 (74357808-74358149)
               

               
               1-300, gnl|rheMac2|chr11 (121348174-121348521)
               

               
               1-300, gnl|rn3|chr12 (42284966-42285338)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-300, gnl|bosTau2|chr2 (70395823-70396104)
               

               
               1-300, gnl|canFam2|chr26 (19292485-19292867)
               

               
               1-300, gnl|echTel1|scaffold_242984 (3119-2747)
               

               
               1-300, gnl|galGal2|chr15 (9292067-9291695)
               

               
               1-300, gnl|hg17|chr11 (73079263-73079606)
               

               
               1-300, gnl|Hg17|chr12 (119242134-119241852)
               

               
               1-300, gnl|loxAfr1|scaffold_43583 (42675-43011)
               

               
               1-300, gnl|mm7|chr5 (114676530-114676147)
               

               
               1-300, gnl|Mm7|chr5 (114676235-114676528)
               

               
               1-300, gnl|monDom2|scaffold_145 (2057388-2057053)
               

               
               1-300, gnl|panTro1|chr9 (74357808-74358149)
               

               
               1-300, gnl|rheMac2|chr11 (121348174-121348521)
               

               
               1-300, gnl|rn3|chr12 (42284966-42285338)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	1-300, gnl\|bosTau2\|chr2 (70395823-70396104)
	1-300, gnl\|canFam2\|chr26 (19292485-19292867)
	1-300, gnl\|echTel1\|scaffold_242984 (3119-2747)
	1-300, gnl\|galGal2\|chr15 (9292067-9291695)
	1-300, gnl\|hg17\|chr11 (73079263-73079606)
	1-300, gnl\|Hg17\|chr12 (119242134-119241852)
	1-300, gnl\|loxAfr1\|scaffold_43583 (42675-43011)
	1-300, gnl\|mm7\|chr5 (114676530-114676147)
	1-300, gnl\|Mm7\|chr5 (114676235-114676528)
	1-300, gnl\|monDom2\|scaffold_145 (2057388-2057053)
	1-300, gnl\|panTro1\|chr9 (74357808-74358149)
	1-300, gnl\|rheMac2\|chr11 (121348174-121348521)
	1-300, gnl\|rn3\|chr12 (42284966-42285338)