Ss1.1-rebs22c_h8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGTGTCCCCCTTCAGCTTCCGCGAGGTGGCCCCCGAGCAGCCCAGCGACCTCCGCATA GGCTTCTACCCCGTCAACCACACCGACTGCCTGGTCTCCCCGCTGCACCACTGCTTCGAC GGCCCCACGGGCGAGCTGGCCCACGCCTTCTTCCCCCCGCACGGCGGCATCCACTTTGAC GACAGCGAGTACTGGGTCCTGGGCCCCACACGCTACAGCTGGAAGAAAGGCGTGTGGCTC ACCGACCTGGTGCACGTGGCGGCCCACGAGATCGGCCACGCGCTGGGCCTGATGCACTCC CAGCACGGCCGGGCGCTCATGCACCTCAACGCCACACTGCGCGGCTGGAAGGCGCTGTCG CAGGACGAGCTGTGGGGGCTGCACCGGCTCTACGGCTGCCTGGACCGGCTGTTCGTGTGC GCGTCCTGGGCGCGGAGGGGCTTCTGTGACGCCCGCCGGAGGCTCATGAAGAGGCTGTGC CCCAGCAGCTGCGACTTCTGCTACGAGTTCCCCTTCCCCACGGTGGCCGCCACGGCGCCG CCCCCCAGGACCAAAACCAGGCTGGTGCCCGAGGGCCGGAACGTGACCTTCCGCTGCGGC CAGAAGATCCTCCACAAGAAGGGCAAAGTGTACTGGTACAAGGACCAGGAGCCCCTGGAG TTCTCCTACCCCGGGTACCTGGCGCTGGGGGGGGCGCACCTTAGGATTATTCCCAACCCC ATCAACGGGGGGACCTAAACCTGCGTGGTGCGCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGTGTCCCCCTTCAGCTTCCGCGAGGTGGCCCCCGAGCAGCCCAGCGACCTCCGCATA GGCTTCTACCCCGTCAACCACACCGACTGCCTGGTCTCCCCGCTGCACCACTGCTTCGAC GGCCCCACGGGCGAGCTGGCCCACGCCTTCTTCCCCCCGCACGGCGGCATCCACTTTGAC GACAGCGAGTACTGGGTCCTGGGCCCCACACGCTACAGCTGGAAGAAAGGCGTGTGGCTC ACCGACCTGGTGCACGTGGCGGCCCACGAGATCGGCCACGCGCTGGGCCTGATGCACTCC CAGCACGGCCGGGCGCTCATGCACCTCAACGCCACACTGCGCGGCTGGAAGGCGCTGTCG CAGGACGAGCTGTGGGGGCTGCACCGGCTCTACGGCTGCCTGGACCGGCTGTTCGTGTGC GCGTCCTGGGCGCGGAGGGGCTTCTGTGACGCCCGCCGGAGGCTCATGAAGAGGCTGTGC CCCAGCAGCTGCGACTTCTGCTACGAGTTCCCCTTCCCCACGGTGGCCGCCACGGCGCCG CCCCCCAGGACCAAAACCAGGCTGGTGCCCGAGGGCCGGAACGTGACCTTCCGCTGCGGC CAGAAGATCCTCCACAAGAAGGGCAAAGTGTACTGGTACAAGGACCAGGAGCCCCTGGAG TTCTCCTACCCCGGGTACCTGGCGCTGGGGGGGGCGCACCTTAGGATTATTCCCAACCCC ATCAACGGGGGGACCTAAACCTGCGTGGTGCGCCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 505-623, - strand, RNAz p=0.709355 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 505-623, - strand, RNAz p=0.709355 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 30-230, gnl|bosTau2|chr16 (37690508-37690311) | |
| 30-230, gnl|Hg17|chr1 (1663915-1664116) | |
| 30-230, gnl|Mm7|chr4 (154641723-154641526) | |
| 394-503, gnl|bosTau2|chr16 (37689714-37689605) | |
| 394-503, gnl|canFam2|chr5 (59697582-59697721) | |
| 394-503, gnl|canFam2|chr5 (59697582-59697721) | |
| 394-503, gnl|danRer3|chrNA (116853725-116853867) | |
| 394-503, gnl|danRer3|chrNA (116853725-116853867) | |
| 394-503, gnl|echTel1|scaffold_263700 (5481-5339) | |
| 394-503, gnl|echTel1|scaffold_263700 (5481-5339) | |
| 394-503, gnl|fr1|chrUn (103288242-103288381) | |
| 394-503, gnl|fr1|chrUn (103288242-103288381) | |
| 394-503, gnl|galGal2|chr21 (1929664-1929549) | |
| 394-503, gnl|galGal2|chr21 (1929664-1929549) | |
| 394-503, gnl|hg17|chr1 (1664722-1664870) | |
| 394-503, gnl|Hg17|chr1 (1664748-1664857) | |
| 394-503, gnl|hg17|chr1_random (1267908-1268056) | |
| 394-503, gnl|mm7|chr4 (154640916-154640768) | |
| 394-503, gnl|mm7|chr4 (154640916-154640768) | |
| 394-503, gnl|Mm7|chr4 (154640892-154640783) | |
| 394-503, gnl|monDom2|scaffold_259 (39642-39796) | |
| 394-503, gnl|monDom2|scaffold_259 (39642-39796) | |
| 394-503, gnl|panTro1|chr1 (1523063-1523211) | |
| 394-503, gnl|panTro1|chr1 (1523063-1523211) | |
| 394-503, gnl|rheMac2|chr1 (4696480-4696628) | |
| 394-503, gnl|rheMac2|chr1 (4696480-4696628) | |
| 394-503, gnl|rn3|chr5 (172498127-172497979) | |
| 394-503, gnl|rn3|chr5 (172498127-172497979) | |
| 394-503, gnl|tetNig1|chrUn_random (28248531-28248413) | |
| 394-503, gnl|tetNig1|chrUn_random (28248531-28248413) | |
| 394-503, gnl|xenTro1|scaffold_609 (511396-511282) | |
| 394-503, gnl|xenTro1|scaffold_609 (511396-511282) | |
| 505-635, gnl|bosTau2|chr16 (37689527-37689397) | |
| 505-635, gnl|canFam2|chr5 (59697792-59697946) | |
| 505-635, gnl|canFam2|chr5 (59697792-59697946) | |
| 505-635, gnl|danRer3|chrNA (116856130-116856265) | |
| 505-635, gnl|danRer3|chrNA (116856130-116856265) | |
| 505-635, gnl|echTel1|scaffold_263700 (5259-5088) | |
| 505-635, gnl|echTel1|scaffold_263700 (5259-5088) | |
| 505-635, gnl|fr1|chrUn (103289136-103289289) | |
| 505-635, gnl|fr1|chrUn (103289136-103289289) | |
| 505-635, gnl|galGal2|chr21 (1928798-1928655) | |
| 505-635, gnl|galGal2|chr21 (1928798-1928655) | |
| 505-635, gnl|hg17|chr1 (1664950-1665104) | |
| 505-635, gnl|Hg17|chr1 (1664961-1665091) | |
| 505-635, gnl|hg17|chr1_random (1268136-1268290) | |
| 505-635, gnl|mm7|chr4 (154640692-154640507) | |
| 505-635, gnl|mm7|chr4 (154640692-154640507) | |
| 505-635, gnl|Mm7|chr4 (154640676-154640546) | |
| 505-635, gnl|monDom2|scaffold_196 (618410-618572) | |
| 505-635, gnl|monDom2|scaffold_196 (618410-618572) | |
| 505-635, gnl|panTro1|chr1 (1523291-1523445) | |
| 505-635, gnl|panTro1|chr1 (1523291-1523445) | |
| 505-635, gnl|rheMac2|chr1 (4696750-4696904) | |
| 505-635, gnl|rheMac2|chr1 (4696750-4696904) | |
| 505-635, gnl|rn3|chr5 (172497895-172497718) | |
| 505-635, gnl|rn3|chr5 (172497895-172497718) | |
| 505-635, gnl|tetNig1|chrUn_random (28247673-28247530) | |
| 505-635, gnl|tetNig1|chrUn_random (28247673-28247530) | |
| 505-635, gnl|xenTro1|scaffold_609 (511201-511065) | |
| 505-635, gnl|xenTro1|scaffold_609 (511201-511065) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-230, gnl|bosTau2|chr16 (37690508-37690311) | |
| 30-230, gnl|Hg17|chr1 (1663915-1664116) | |
| 30-230, gnl|Mm7|chr4 (154641723-154641526) | |
| 394-503, gnl|bosTau2|chr16 (37689714-37689605) | |
| 394-503, gnl|canFam2|chr5 (59697582-59697721) | |
| 394-503, gnl|canFam2|chr5 (59697582-59697721) | |
| 394-503, gnl|danRer3|chrNA (116853725-116853867) | |
| 394-503, gnl|danRer3|chrNA (116853725-116853867) | |
| 394-503, gnl|echTel1|scaffold_263700 (5481-5339) | |
| 394-503, gnl|echTel1|scaffold_263700 (5481-5339) | |
| 394-503, gnl|fr1|chrUn (103288242-103288381) | |
| 394-503, gnl|fr1|chrUn (103288242-103288381) | |
| 394-503, gnl|galGal2|chr21 (1929664-1929549) | |
| 394-503, gnl|galGal2|chr21 (1929664-1929549) | |
| 394-503, gnl|hg17|chr1 (1664722-1664870) | |
| 394-503, gnl|Hg17|chr1 (1664748-1664857) | |
| 394-503, gnl|hg17|chr1_random (1267908-1268056) | |
| 394-503, gnl|mm7|chr4 (154640916-154640768) | |
| 394-503, gnl|mm7|chr4 (154640916-154640768) | |
| 394-503, gnl|Mm7|chr4 (154640892-154640783) | |
| 394-503, gnl|monDom2|scaffold_259 (39642-39796) | |
| 394-503, gnl|monDom2|scaffold_259 (39642-39796) | |
| 394-503, gnl|panTro1|chr1 (1523063-1523211) | |
| 394-503, gnl|panTro1|chr1 (1523063-1523211) | |
| 394-503, gnl|rheMac2|chr1 (4696480-4696628) | |
| 394-503, gnl|rheMac2|chr1 (4696480-4696628) | |
| 394-503, gnl|rn3|chr5 (172498127-172497979) | |
| 394-503, gnl|rn3|chr5 (172498127-172497979) | |
| 394-503, gnl|tetNig1|chrUn_random (28248531-28248413) | |
| 394-503, gnl|tetNig1|chrUn_random (28248531-28248413) | |
| 394-503, gnl|xenTro1|scaffold_609 (511396-511282) | |
| 394-503, gnl|xenTro1|scaffold_609 (511396-511282) | |
| 505-635, gnl|bosTau2|chr16 (37689527-37689397) | |
| 505-635, gnl|canFam2|chr5 (59697792-59697946) | |
| 505-635, gnl|canFam2|chr5 (59697792-59697946) | |
| 505-635, gnl|danRer3|chrNA (116856130-116856265) | |
| 505-635, gnl|danRer3|chrNA (116856130-116856265) | |
| 505-635, gnl|echTel1|scaffold_263700 (5259-5088) | |
| 505-635, gnl|echTel1|scaffold_263700 (5259-5088) | |
| 505-635, gnl|fr1|chrUn (103289136-103289289) | |
| 505-635, gnl|fr1|chrUn (103289136-103289289) | |
| 505-635, gnl|galGal2|chr21 (1928798-1928655) | |
| 505-635, gnl|galGal2|chr21 (1928798-1928655) | |
| 505-635, gnl|hg17|chr1 (1664950-1665104) | |
| 505-635, gnl|Hg17|chr1 (1664961-1665091) | |
| 505-635, gnl|hg17|chr1_random (1268136-1268290) | |
| 505-635, gnl|mm7|chr4 (154640692-154640507) | |
| 505-635, gnl|mm7|chr4 (154640692-154640507) | |
| 505-635, gnl|Mm7|chr4 (154640676-154640546) | |
| 505-635, gnl|monDom2|scaffold_196 (618410-618572) | |
| 505-635, gnl|monDom2|scaffold_196 (618410-618572) | |
| 505-635, gnl|panTro1|chr1 (1523291-1523445) | |
| 505-635, gnl|panTro1|chr1 (1523291-1523445) | |
| 505-635, gnl|rheMac2|chr1 (4696750-4696904) | |
| 505-635, gnl|rheMac2|chr1 (4696750-4696904) | |
| 505-635, gnl|rn3|chr5 (172497895-172497718) | |
| 505-635, gnl|rn3|chr5 (172497895-172497718) | |
| 505-635, gnl|tetNig1|chrUn_random (28247673-28247530) | |
| 505-635, gnl|tetNig1|chrUn_random (28247673-28247530) | |
| 505-635, gnl|xenTro1|scaffold_609 (511201-511065) | |
| 505-635, gnl|xenTro1|scaffold_609 (511201-511065) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| eep (0.122564) | |
| ebs (0.118301) |