Non-Coding RNA Search

Ss1.1-rebs22c_l18.5

Sequence:


               
               AGTACACAAAGGCTGGCCCTCGTTGGCACTCGCATGATGTGCTTCGGCAAAACAGAGCTA
TGGCTTGGCATACAACCTCTCTAAGATCCCGACCAGTAAAAAAGGATATACTTTTGGAGC
CAGAACAGCCGTGAGGTTTGAGCCAATCAGCAAGGATACAACACCTTACCCAGGCATGTA
CCAGACAGTCAGTCCTCAAGAGCAAACACACAAACGAAATTTTGCTCCCTTTAATTCTTT
GTTGCCTCGATTTAAGACAGGCTCGAAGGACACTTATCCTGGCCCTGGCACTTACAACCC
AGACGTAAAGACATCCCAGAAAATCATCTGGCCAATGAAATTTGGACCTCCAGACTGGGC
TCAAATTCCATGTCTACAGAAAAGAACCCTGAAAGCTGAGCTGCCCACAGACAAAGACTT
TGGAGCCCTTTACATAATACTTACCCATGTATCAACGATTCTTTTTTTAAGATTTTTTGT
TATAGTTGATTTACAGTGTTCTGTCAATTTCTGCTCTACGTCAAAGTGACCCAGCCATAT
ATAAATATTCTTTTTCTCCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACACAAAGGCTGGCCCTCGTTGGCACTCGCATGATGTGCTTCGGCAAAACAGAGCTA
TGGCTTGGCATACAACCTCTCTAAGATCCCGACCAGTAAAAAAGGATATACTTTTGGAGC
CAGAACAGCCGTGAGGTTTGAGCCAATCAGCAAGGATACAACACCTTACCCAGGCATGTA
CCAGACAGTCAGTCCTCAAGAGCAAACACACAAACGAAATTTTGCTCCCTTTAATTCTTT
GTTGCCTCGATTTAAGACAGGCTCGAAGGACACTTATCCTGGCCCTGGCACTTACAACCC
AGACGTAAAGACATCCCAGAAAATCATCTGGCCAATGAAATTTGGACCTCCAGACTGGGC
TCAAATTCCATGTCTACAGAAAAGAACCCTGAAAGCTGAGCTGCCCACAGACAAAGACTT
TGGAGCCCTTTACATAATACTTACCCATGTATCAACGATTCTTTTTTTAAGATTTTTTGT
TATAGTTGATTTACAGTGTTCTGTCAATTTCTGCTCTACGTCAAAGTGACCCAGCCATAT
ATAAATATTCTTTTTCTCCCATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55587716|ref|XP_513643.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55587716|ref|XP_513643.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               54-161, - strand, RNAz p=0.885392

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-161, - strand, RNAz p=0.885392

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               54-161, gnl|bosTau2|chr3 (27912068-27911961)
               

               
               54-161, gnl|canFam2|chr6 (43801020-43800900)
               

               
               54-161, gnl|dasNov1|scaffold_161165 (4523-4643)
               

               
               54-161, gnl|echTel1|scaffold_29116 (531-411)
               

               
               54-161, gnl|galGal2|chr26 (3549810-3549702)
               

               
               54-161, gnl|hg17|chr1 (111602333-111602441)
               

               
               54-161, gnl|Hg17|chr1 (111602336-111602438)
               

               
               54-161, gnl|loxAfr1|scaffold_21919 (30359-30242)
               

               
               54-161, gnl|mm7|chr3 (105818765-105818657)
               

               
               54-161, gnl|Mm7|chr3 (105818760-105818658)
               

               
               54-161, gnl|monDom2|scaffold_0 (4493403-4493294)
               

               
               54-161, gnl|panTro1|chr1 (110683916-110683808)
               

               
               54-161, gnl|rheMac2|chr1 (114362612-114362720)
               

               
               54-161, gnl|rn3|chr2 (201216180-201216072)
               


               
               274-463, gnl|bosTau2|chr3 (27909186-27908998)
               

               
               274-463, gnl|Hg17|chr1 (111604761-111604957)
               

               
               274-463, gnl|Mm7|chr3 (105816686-105816495)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-161, gnl|bosTau2|chr3 (27912068-27911961)
               

               
               54-161, gnl|canFam2|chr6 (43801020-43800900)
               

               
               54-161, gnl|dasNov1|scaffold_161165 (4523-4643)
               

               
               54-161, gnl|echTel1|scaffold_29116 (531-411)
               

               
               54-161, gnl|galGal2|chr26 (3549810-3549702)
               

               
               54-161, gnl|hg17|chr1 (111602333-111602441)
               

               
               54-161, gnl|Hg17|chr1 (111602336-111602438)
               

               
               54-161, gnl|loxAfr1|scaffold_21919 (30359-30242)
               

               
               54-161, gnl|mm7|chr3 (105818765-105818657)
               

               
               54-161, gnl|Mm7|chr3 (105818760-105818658)
               

               
               54-161, gnl|monDom2|scaffold_0 (4493403-4493294)
               

               
               54-161, gnl|panTro1|chr1 (110683916-110683808)
               

               
               54-161, gnl|rheMac2|chr1 (114362612-114362720)
               

               
               54-161, gnl|rn3|chr2 (201216180-201216072)
               


               
               274-463, gnl|bosTau2|chr3 (27909186-27908998)
               

               
               274-463, gnl|Hg17|chr1 (111604761-111604957)
               

               
               274-463, gnl|Mm7|chr3 (105816686-105816495)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ebs (0.118301)

	54-161, gnl\|bosTau2\|chr3 (27912068-27911961)
	54-161, gnl\|canFam2\|chr6 (43801020-43800900)
	54-161, gnl\|dasNov1\|scaffold_161165 (4523-4643)
	54-161, gnl\|echTel1\|scaffold_29116 (531-411)
	54-161, gnl\|galGal2\|chr26 (3549810-3549702)
	54-161, gnl\|hg17\|chr1 (111602333-111602441)
	54-161, gnl\|Hg17\|chr1 (111602336-111602438)
	54-161, gnl\|loxAfr1\|scaffold_21919 (30359-30242)
	54-161, gnl\|mm7\|chr3 (105818765-105818657)
	54-161, gnl\|Mm7\|chr3 (105818760-105818658)
	54-161, gnl\|monDom2\|scaffold_0 (4493403-4493294)
	54-161, gnl\|panTro1\|chr1 (110683916-110683808)
	54-161, gnl\|rheMac2\|chr1 (114362612-114362720)
	54-161, gnl\|rn3\|chr2 (201216180-201216072)

	274-463, gnl\|bosTau2\|chr3 (27909186-27908998)
	274-463, gnl\|Hg17\|chr1 (111604761-111604957)
	274-463, gnl\|Mm7\|chr3 (105816686-105816495)