Ss1.1-rebs23c_c16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCTCTCTCTTTTTCGTTGCCTGACCGCCGCCATCATGGGTCGCATGCACGCTCCGGG GAAGGGCCTGTCCCAGTCGGCTCTGCCCTACCGCCGCAGCGTCCCCACCTGGCTGAAGCT GACGTCTGACGACGTGAAGGAGCAGATCTACAAACTGGCCAAGAAGGGCCTGACTCCCTC ACAGATCGGTGTGATCCTGAGAGACTCACACGGTGTTGCACAAGTACGTTTTGTGACAGG CAATAAAATCTTGAGGATTCTTAAGTCCAAAGGACTTGCTCCTGATCTTCCTGAGGATCT CTACCATTTAATTAAGAAAGCTGTTGCTGTTCGAAAGCATCTTGAAAGGAACAGAAAGGA TAAAGATGCTAAATTCCGTCTGATTCTGATTGAGAGCCGTATTCACCGGTTGGCTCGATA TTACAAGACCAAACGAGTCCTTCCGCCAAATTGGAAATACGAGTCATCCACAGCCTCTGC CCTGGTTGCATAAACTTGTTGGTTGTATGCAAAACAATAAAATCATTGTTTAATTAGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCTCTCTCTTTTTCGTTGCCTGACCGCCGCCATCATGGGTCGCATGCACGCTCCGGG GAAGGGCCTGTCCCAGTCGGCTCTGCCCTACCGCCGCAGCGTCCCCACCTGGCTGAAGCT GACGTCTGACGACGTGAAGGAGCAGATCTACAAACTGGCCAAGAAGGGCCTGACTCCCTC ACAGATCGGTGTGATCCTGAGAGACTCACACGGTGTTGCACAAGTACGTTTTGTGACAGG CAATAAAATCTTGAGGATTCTTAAGTCCAAAGGACTTGCTCCTGATCTTCCTGAGGATCT CTACCATTTAATTAAGAAAGCTGTTGCTGTTCGAAAGCATCTTGAAAGGAACAGAAAGGA TAAAGATGCTAAATTCCGTCTGATTCTGATTGAGAGCCGTATTCACCGGTTGGCTCGATA TTACAAGACCAAACGAGTCCTTCCGCCAAATTGGAAATACGAGTCATCCACAGCCTCTGC CCTGGTTGCATAAACTTGTTGGTTGTATGCAAAACAATAAAATCATTGTTTAATTAGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 165-284, - strand, RNAz p=0.57364 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 165-284, - strand, RNAz p=0.57364 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 5-553, gnl|bosTau2|chr1 (51539375-51538830) | |
| 5-553, gnl|Hg17|chr15 (50174754-50175291) | |
| 5-553, gnl|Mm7|chr7 (84467992-84467448) | |
| 14-326, gnl|bosTau2|chr13 (55555787-55555488) | |
| 14-326, gnl|Hg17|chr1 (52950365-52950105) | |
| 14-326, gnl|Mm7|chr7 (84467986-84467727) | |
| 357-471, gnl|bosTau2|chr15 (23242566-23242681) | |
| 357-471, gnl|canFam2|chr21 (42877419-42877553) | |
| 357-471, gnl|danRer3|chr7 (17747913-17747772) | |
| 357-471, gnl|dasNov1|scaffold_30233 (15408-15300) | |
| 357-471, gnl|echTel1|scaffold_213028 (2898-3027) | |
| 357-471, gnl|fr1|chrUn (284812975-284812847) | |
| 357-471, gnl|galGal2|chr5 (9318498-9318623) | |
| 357-471, gnl|hg17|chr11 (17053203-17053337) | |
| 357-471, gnl|Hg17|chr11 (17053322-17053208) | |
| 357-471, gnl|loxAfr1|scaffold_78039 (1048-1141) | |
| 357-471, gnl|mm7|chr7 (112248596-112248726) | |
| 357-471, gnl|Mm7|chr7 (112248715-112248601) | |
| 357-471, gnl|monDom2|scaffold_10 (54916037-54915917) | |
| 357-471, gnl|oryCun1|scaffold_197449 (18173-18041) | |
| 357-471, gnl|panTro1|chr9 (17236723-17236857) | |
| 357-471, gnl|rheMac2|chr14 (54858789-54858655) | |
| 357-471, gnl|rn3|chr1 (174565735-174565865) | |
| 357-471, gnl|tetNig1|chrUn_random (25747396-25747521) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-553, gnl|bosTau2|chr1 (51539375-51538830) | |
| 5-553, gnl|Hg17|chr15 (50174754-50175291) | |
| 5-553, gnl|Mm7|chr7 (84467992-84467448) | |
| 14-326, gnl|bosTau2|chr13 (55555787-55555488) | |
| 14-326, gnl|Hg17|chr1 (52950365-52950105) | |
| 14-326, gnl|Mm7|chr7 (84467986-84467727) | |
| 357-471, gnl|bosTau2|chr15 (23242566-23242681) | |
| 357-471, gnl|canFam2|chr21 (42877419-42877553) | |
| 357-471, gnl|danRer3|chr7 (17747913-17747772) | |
| 357-471, gnl|dasNov1|scaffold_30233 (15408-15300) | |
| 357-471, gnl|echTel1|scaffold_213028 (2898-3027) | |
| 357-471, gnl|fr1|chrUn (284812975-284812847) | |
| 357-471, gnl|galGal2|chr5 (9318498-9318623) | |
| 357-471, gnl|hg17|chr11 (17053203-17053337) | |
| 357-471, gnl|Hg17|chr11 (17053322-17053208) | |
| 357-471, gnl|loxAfr1|scaffold_78039 (1048-1141) | |
| 357-471, gnl|mm7|chr7 (112248596-112248726) | |
| 357-471, gnl|Mm7|chr7 (112248715-112248601) | |
| 357-471, gnl|monDom2|scaffold_10 (54916037-54915917) | |
| 357-471, gnl|oryCun1|scaffold_197449 (18173-18041) | |
| 357-471, gnl|panTro1|chr9 (17236723-17236857) | |
| 357-471, gnl|rheMac2|chr14 (54858789-54858655) | |
| 357-471, gnl|rn3|chr1 (174565735-174565865) | |
| 357-471, gnl|tetNig1|chrUn_random (25747396-25747521) |
| Expressed library(ies): 89 entry(ies) | More info |
| Expressed library(ies): 89 entry(ies) | Help | Less info |
| mgp (5.53633) | |
| cag (4.38464) | |
| eje (3.95335) | |
| mcp (3.92491) | |
| fty (3.51679) | |
| ese (3.41556) | |
| rec (3.28834) | |
| sag (3.10616) | |
| jca (2.849) | |
| ova (2.84091) | |
| nlu (2.68353) | |
| csp (2.41779) | |
| ecc (2.41574) | |
| eep (2.32872) | |
| med (2.32504) | |
| cly (2.29219) | |
| eru (2.28091) | |
| ebs (2.24772) | |
| cut (2.20901) | |
| ece (2.06375) | |
| nep (2.02317) | |
| vin (1.99534) | |
| nmm (1.99203) | |
| cov (1.98229) | |
| hlv (1.94959) | |
| ton (1.9305) | |
| elu (1.92678) | |
| hea (1.84049) | |
| isp (1.80451) | |
| nco (1.77907) | |
| ssp (1.76176) | |
| lnt (1.7077) | |
| csk (1.68895) | |
| cga (1.67457) | |
| pty (1.56986) | |
| mas (1.47213) | |
| fli (1.42017) | |
| fce (1.35796) | |
| thg (1.26791) | |
| che (1.22683) | |
| cli (1.22249) | |
| jej (1.18706) | |
| nje (1.16144) | |
| nbm (1.09257) | |
| ill (1.05356) | |
| duo (1.03681) | |
| eye (1.02302) | |
| fhi (1.01747) | |
| cst (0.980255) | |
| col (0.975039) | |
| nca (0.958117) | |
| cbe (0.956938) | |
| sto (0.899119) | |
| nms (0.855432) | |
| amn (0.835422) | |
| cki (0.826173) | |
| ute (0.796707) | |
| aor (0.781097) | |
| pan (0.707881) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| mga (0.64082) | |
| sme (0.610874) | |
| eli (0.607257) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| pro (0.512033) | |
| spc (0.453463) | |
| fat (0.442282) | |
| ski (0.440205) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| bla (0.248694) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 89 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (5.53633) | |
| cag (4.38464) | |
| eje (3.95335) | |
| mcp (3.92491) | |
| fty (3.51679) | |
| ese (3.41556) | |
| rec (3.28834) | |
| sag (3.10616) | |
| jca (2.849) | |
| ova (2.84091) | |
| nlu (2.68353) | |
| csp (2.41779) | |
| ecc (2.41574) | |
| eep (2.32872) | |
| med (2.32504) | |
| cly (2.29219) | |
| eru (2.28091) | |
| ebs (2.24772) | |
| cut (2.20901) | |
| ece (2.06375) | |
| nep (2.02317) | |
| vin (1.99534) | |
| nmm (1.99203) | |
| cov (1.98229) | |
| hlv (1.94959) | |
| ton (1.9305) | |
| elu (1.92678) | |
| hea (1.84049) | |
| isp (1.80451) | |
| nco (1.77907) | |
| ssp (1.76176) | |
| lnt (1.7077) | |
| csk (1.68895) | |
| cga (1.67457) | |
| pty (1.56986) | |
| mas (1.47213) | |
| fli (1.42017) | |
| fce (1.35796) | |
| thg (1.26791) | |
| che (1.22683) | |
| cli (1.22249) | |
| jej (1.18706) | |
| nje (1.16144) | |
| nbm (1.09257) | |
| ill (1.05356) | |
| duo (1.03681) | |
| eye (1.02302) | |
| fhi (1.01747) | |
| cst (0.980255) | |
| col (0.975039) | |
| nca (0.958117) | |
| cbe (0.956938) | |
| sto (0.899119) | |
| nms (0.855432) | |
| amn (0.835422) | |
| cki (0.826173) | |
| ute (0.796707) | |
| aor (0.781097) | |
| pan (0.707881) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| mga (0.64082) | |
| sme (0.610874) | |
| eli (0.607257) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| pro (0.512033) | |
| spc (0.453463) | |
| fat (0.442282) | |
| ski (0.440205) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| bla (0.248694) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) | |
| ldo (0.0970026) |