Non-Coding RNA Search

Ss1.1-rebs23c_d13.5

Sequence:


               
               CCGGCCGTATGATGAACCCAAGCTCCAAGAGTACACCCAAACCATATTACGGATGTTCGA
CTTGAACGGGGATGGCAAACTGGGCCTCTCGGAGATGTCCCGACTCTTGCCTGTCCAGGA
AAACTTCCTGCTTAAATTTCAGGGCATGAAGCTGACCGCGGAGGAGTTCAACCCCATCTT
CACCTTTTACGACAAGGATGGAAGTGGCTACATCGATGAGAATTAGCTGGACGCCCTCCT
AAAGGATCTGTATGAGAAAAACAAGAAGGAAATGAACATCCAACAGCTCACCAACTACAG
AAAGAGCGTCATGTCCTTGGCCGAGGCGGGCAAGCTCTACCGCAAGGACCTGGAGATTGT
TCTCTGCAGTGAGCCCCCCATGTAAAAGGGGGGATAGGGTTGTTCCTCCATCTCCCCACT
CCCCGGTCCTGCCCCCGCTGCCCCGCCACCTCCACCCAAGATCCGGAAATCCGGAGCATC
CCTCCCTCCAACTGCATGGAGGGTGGGCAGGGGCACGGGTGGGGGTTCCCAGGTTCTCTT
GGCCAGTGATGCATGAGCTCATTCGCTGTATGATTTCAGCTTCTGTATCCAACAGAGTGG
ACCCTCCCCTCTGGCCCCCCCGCCCCCCGCACCGTGCCACCACCCACCCGAACCCCCAGG
CTCCACGCACCACTTTGCTAACGGTGTAGCTGTTTTCTCAGAGTCCTTGTCTGTGGCGGG
CCCTTGTCTTCTTGGCTCAGTGTGCACCCTTCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCGTATGATGAACCCAAGCTCCAAGAGTACACCCAAACCATATTACGGATGTTCGA
CTTGAACGGGGATGGCAAACTGGGCCTCTCGGAGATGTCCCGACTCTTGCCTGTCCAGGA
AAACTTCCTGCTTAAATTTCAGGGCATGAAGCTGACCGCGGAGGAGTTCAACCCCATCTT
CACCTTTTACGACAAGGATGGAAGTGGCTACATCGATGAGAATTAGCTGGACGCCCTCCT
AAAGGATCTGTATGAGAAAAACAAGAAGGAAATGAACATCCAACAGCTCACCAACTACAG
AAAGAGCGTCATGTCCTTGGCCGAGGCGGGCAAGCTCTACCGCAAGGACCTGGAGATTGT
TCTCTGCAGTGAGCCCCCCATGTAAAAGGGGGGATAGGGTTGTTCCTCCATCTCCCCACT
CCCCGGTCCTGCCCCCGCTGCCCCGCCACCTCCACCCAAGATCCGGAAATCCGGAGCATC
CCTCCCTCCAACTGCATGGAGGGTGGGCAGGGGCACGGGTGGGGGTTCCCAGGTTCTCTT
GGCCAGTGATGCATGAGCTCATTCGCTGTATGATTTCAGCTTCTGTATCCAACAGAGTGG
ACCCTCCCCTCTGGCCCCCCCGCCCCCCGCACCGTGCCACCACCCACCCGAACCCCCAGG
CTCCACGCACCACTTTGCTAACGGTGTAGCTGTTTTCTCAGAGTCCTTGTCTGTGGCGGG
CCCTTGTCTTCTTGGCTCAGTGTGCACCCTTCCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|393387|emb|CAA52163.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|393387|emb|CAA52163.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               299-413, - strand, RNAz p=0.781752

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-413, - strand, RNAz p=0.781752

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               267-483, gnl|bosTau2|chr18 (33016460-33016672)
               

               
               267-483, gnl|Hg17|chr16 (69981151-69981360)
               

               
               267-483, gnl|Mm7|chr8 (108743342-108743122)
               


               
               488-756, gnl|bosTau2|chr18 (33016812-33017078)
               

               
               488-756, gnl|Hg17|chr16 (69981489-69981768)
               

               
               488-756, gnl|Mm7|chr8 (108743016-108742742)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-483, gnl|bosTau2|chr18 (33016460-33016672)
               

               
               267-483, gnl|Hg17|chr16 (69981151-69981360)
               

               
               267-483, gnl|Mm7|chr8 (108743342-108743122)
               


               
               488-756, gnl|bosTau2|chr18 (33016812-33017078)
               

               
               488-756, gnl|Hg17|chr16 (69981489-69981768)
               

               
               488-756, gnl|Mm7|chr8 (108743016-108742742)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	267-483, gnl\|bosTau2\|chr18 (33016460-33016672)
	267-483, gnl\|Hg17\|chr16 (69981151-69981360)
	267-483, gnl\|Mm7\|chr8 (108743342-108743122)

	488-756, gnl\|bosTau2\|chr18 (33016812-33017078)
	488-756, gnl\|Hg17\|chr16 (69981489-69981768)
	488-756, gnl\|Mm7\|chr8 (108743016-108742742)