Ss1.1-rebs23c_d4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGAAGCCCTGTGCAGGCACTGGCCGGGCCCCATGAGCCTGGCCTTGTACCTGACAGA CGCAGAGGCCCAGCAGTTCCTGCGTTTCGTGGAGACCTCGGCGGTGCTCTCCGCCCGGCA GAATGTGGCCTACCACGTGGTGTACCGCGAGGGTCCCCTCTACCCCATCAACCAGCTTCG CAACGTGGCCCTGGCGCAGGCCCTCACGCCTTACGTCTTCCTCAGTGACATTGACTTCCT GCCCGCCTACTCCCTCTACCACTACCTCAGGGCCTCCATCGAGCAGCTGGAGCTGGGCAC GGGTGCGTGTGGGGTGGCCCTGGTGGTGCCAGCATTAGCATCCTCTGTGAAATAGGGTCA CATTAGGGTGGGCAAGGCCGAACTTCTCCGGGCTGCCACAGCAGAGGGAGGGGCTGGGAC CAGGTACCATGAGTGGCCCCGGGGTCATGCGCCCACAGACTATGCCCGCTGGCGGGAGGC CCAGGCCCCGTACCGCGTGCAATGGGCAGCTGACTACGAGCCCTATGTGGTGGTGCCACG AGACTGTCCCCGCTATGATCCCCGATTTGTGGGCTTTGGCTGGAACAAGGTGGCCCACAT CGTGGAGTTGGATGCACAGGAATACGAGCTCCTGGTGCTGCCCGAGGCCTTCATCATCCA CCTGCCACACGCCCCAAGCCTTGACATCTCCCGCTTCCGCTCCAGCCCCACCTATCGTGA CTGCCTCCAGGCCCTCAAGGATGAATTTCACCAGGACTTGTCCCGTCACTACGGGGCTGC TGCCCTCAAATACCTCACTGCCCTGCAGCAGCCCCGAGGCCCCACCTGACTGCACCCCTG CCTGTCTCCACGACTCTCACGCACTCCTTGCAGACACTGGAGCAGCCTTGCTGCCACCCC TCCCTCTCTGCTATTTAAGTTATTTAAGTCCCTGGGAAGGACTGTGATGGGGCGCCCGTG GGGTGGGGCCCGGGGCTTCCCTTTGCTGCTATTCTGTGCTTGGGGGTCTCGTGTTCCTCT GCCCCAGCTGGTTTGGGGCTGGTTCCTACTTCCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGAAGCCCTGTGCAGGCACTGGCCGGGCCCCATGAGCCTGGCCTTGTACCTGACAGA CGCAGAGGCCCAGCAGTTCCTGCGTTTCGTGGAGACCTCGGCGGTGCTCTCCGCCCGGCA GAATGTGGCCTACCACGTGGTGTACCGCGAGGGTCCCCTCTACCCCATCAACCAGCTTCG CAACGTGGCCCTGGCGCAGGCCCTCACGCCTTACGTCTTCCTCAGTGACATTGACTTCCT GCCCGCCTACTCCCTCTACCACTACCTCAGGGCCTCCATCGAGCAGCTGGAGCTGGGCAC GGGTGCGTGTGGGGTGGCCCTGGTGGTGCCAGCATTAGCATCCTCTGTGAAATAGGGTCA CATTAGGGTGGGCAAGGCCGAACTTCTCCGGGCTGCCACAGCAGAGGGAGGGGCTGGGAC CAGGTACCATGAGTGGCCCCGGGGTCATGCGCCCACAGACTATGCCCGCTGGCGGGAGGC CCAGGCCCCGTACCGCGTGCAATGGGCAGCTGACTACGAGCCCTATGTGGTGGTGCCACG AGACTGTCCCCGCTATGATCCCCGATTTGTGGGCTTTGGCTGGAACAAGGTGGCCCACAT CGTGGAGTTGGATGCACAGGAATACGAGCTCCTGGTGCTGCCCGAGGCCTTCATCATCCA CCTGCCACACGCCCCAAGCCTTGACATCTCCCGCTTCCGCTCCAGCCCCACCTATCGTGA CTGCCTCCAGGCCCTCAAGGATGAATTTCACCAGGACTTGTCCCGTCACTACGGGGCTGC TGCCCTCAAATACCTCACTGCCCTGCAGCAGCCCCGAGGCCCCACCTGACTGCACCCCTG CCTGTCTCCACGACTCTCACGCACTCCTTGCAGACACTGGAGCAGCCTTGCTGCCACCCC TCCCTCTCTGCTATTTAAGTTATTTAAGTCCCTGGGAAGGACTGTGATGGGGCGCCCGTG GGGTGGGGCCCGGGGCTTCCCTTTGCTGCTATTCTGTGCTTGGGGGTCTCGTGTTCCTCT GCCCCAGCTGGTTTGGGGCTGGTTCCTACTTCCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.985597 | |
| 1-105, - strand, RNAz p=0.692302 | |
| 696-844, - strand, RNAz p=0.999459 | |
| 722-851, - strand, RNAz p=0.999686 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.985597 | |
| 1-105, - strand, RNAz p=0.692302 | |
| 696-844, - strand, RNAz p=0.999459 | |
| 722-851, - strand, RNAz p=0.999686 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-271, gnl|bosTau2|chr15 (47743618-47743888) | |
| 1-271, gnl|canFam2|chr18 (46532783-46532491) | |
| 1-271, gnl|danRer3|chr18 (46702174-46702463) | |
| 1-271, gnl|dasNov1|scaffold_4877 (11009-11301) | |
| 1-271, gnl|echTel1|scaffold_311183 (57102-57393) | |
| 1-271, gnl|fr1|chrUn (299024535-299024826) | |
| 1-271, gnl|galGal2|chr5 (21186762-21186458) | |
| 1-271, gnl|hg17|chr11 (45905437-45905729) | |
| 1-271, gnl|Hg17|chr11 (45905451-45905721) | |
| 1-271, gnl|loxAfr1|scaffold_30564 (16662-16955) | |
| 1-271, gnl|mm7|chr2 (92217319-92217027) | |
| 1-271, gnl|Mm7|chr2 (92217303-92217033) | |
| 1-271, gnl|monDom2|scaffold_33 (11936652-11936956) | |
| 1-271, gnl|oryCun1|scaffold_204989 (55685-55977) | |
| 1-271, gnl|panTro1|chr9 (46411590-46411882) | |
| 1-271, gnl|rheMac2|chr14 (26206816-26206524) | |
| 1-271, gnl|rn3|chr3 (76660532-76660240) | |
| 1-271, gnl|tetNig1|chrUn_random (6458357-6458070) | |
| 1-271, gnl|xenTro1|scaffold_76 (1631210-1631502) | |
| 617-851, gnl|bosTau2|chr15 (47744995-47745232) | |
| 617-851, gnl|canFam2|chr18 (46531538-46531344) | |
| 617-851, gnl|danRer3|chr18 (46708104-46708296) | |
| 617-851, gnl|dasNov1|scaffold_4877 (12244-12435) | |
| 617-851, gnl|echTel1|scaffold_311183 (58163-58355) | |
| 617-851, gnl|fr1|chrUn (299025519-299025714) | |
| 617-851, gnl|galGal2|chr5 (21185667-21185478) | |
| 617-851, gnl|hg17|chr11 (45906747-45906939) | |
| 617-851, gnl|Hg17|chr11 (45906754-45907038) | |
| 617-851, gnl|loxAfr1|scaffold_495 (57952-57761) | |
| 617-851, gnl|mm7|chr2 (92216217-92216031) | |
| 617-851, gnl|Mm7|chr2 (92216214-92215955) | |
| 617-851, gnl|monDom2|scaffold_33 (11938013-11938153) | |
| 617-851, gnl|oryCun1|scaffold_204989 (56766-56957) | |
| 617-851, gnl|panTro1|chr9 (46412900-46413092) | |
| 617-851, gnl|rheMac2|chr14 (26205506-26205314) | |
| 617-851, gnl|rn3|chr3 (76659391-76659199) | |
| 617-851, gnl|tetNig1|chrUn_random (6457445-6457256) | |
| 617-851, gnl|xenTro1|scaffold_76 (1633392-1633581) | |
| 886-1055, gnl|bosTau2|chr15 (47745221-47745389) | |
| 886-1055, gnl|Hg17|chr11 (45907027-45907181) | |
| 886-1055, gnl|Mm7|chr2 (92215966-92215645) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-271, gnl|bosTau2|chr15 (47743618-47743888) | |
| 1-271, gnl|canFam2|chr18 (46532783-46532491) | |
| 1-271, gnl|danRer3|chr18 (46702174-46702463) | |
| 1-271, gnl|dasNov1|scaffold_4877 (11009-11301) | |
| 1-271, gnl|echTel1|scaffold_311183 (57102-57393) | |
| 1-271, gnl|fr1|chrUn (299024535-299024826) | |
| 1-271, gnl|galGal2|chr5 (21186762-21186458) | |
| 1-271, gnl|hg17|chr11 (45905437-45905729) | |
| 1-271, gnl|Hg17|chr11 (45905451-45905721) | |
| 1-271, gnl|loxAfr1|scaffold_30564 (16662-16955) | |
| 1-271, gnl|mm7|chr2 (92217319-92217027) | |
| 1-271, gnl|Mm7|chr2 (92217303-92217033) | |
| 1-271, gnl|monDom2|scaffold_33 (11936652-11936956) | |
| 1-271, gnl|oryCun1|scaffold_204989 (55685-55977) | |
| 1-271, gnl|panTro1|chr9 (46411590-46411882) | |
| 1-271, gnl|rheMac2|chr14 (26206816-26206524) | |
| 1-271, gnl|rn3|chr3 (76660532-76660240) | |
| 1-271, gnl|tetNig1|chrUn_random (6458357-6458070) | |
| 1-271, gnl|xenTro1|scaffold_76 (1631210-1631502) | |
| 617-851, gnl|bosTau2|chr15 (47744995-47745232) | |
| 617-851, gnl|canFam2|chr18 (46531538-46531344) | |
| 617-851, gnl|danRer3|chr18 (46708104-46708296) | |
| 617-851, gnl|dasNov1|scaffold_4877 (12244-12435) | |
| 617-851, gnl|echTel1|scaffold_311183 (58163-58355) | |
| 617-851, gnl|fr1|chrUn (299025519-299025714) | |
| 617-851, gnl|galGal2|chr5 (21185667-21185478) | |
| 617-851, gnl|hg17|chr11 (45906747-45906939) | |
| 617-851, gnl|Hg17|chr11 (45906754-45907038) | |
| 617-851, gnl|loxAfr1|scaffold_495 (57952-57761) | |
| 617-851, gnl|mm7|chr2 (92216217-92216031) | |
| 617-851, gnl|Mm7|chr2 (92216214-92215955) | |
| 617-851, gnl|monDom2|scaffold_33 (11938013-11938153) | |
| 617-851, gnl|oryCun1|scaffold_204989 (56766-56957) | |
| 617-851, gnl|panTro1|chr9 (46412900-46413092) | |
| 617-851, gnl|rheMac2|chr14 (26205506-26205314) | |
| 617-851, gnl|rn3|chr3 (76659391-76659199) | |
| 617-851, gnl|tetNig1|chrUn_random (6457445-6457256) | |
| 617-851, gnl|xenTro1|scaffold_76 (1633392-1633581) | |
| 886-1055, gnl|bosTau2|chr15 (47745221-47745389) | |
| 886-1055, gnl|Hg17|chr11 (45907027-45907181) | |
| 886-1055, gnl|Mm7|chr2 (92215966-92215645) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |