Non-Coding RNA Search

Ss1.1-rebs23c_g16.5

Sequence:


               
               CCTGAGCATCACATACCGGACAGAGGATGCCGATCTGCGGCTGCAGAGTGCATGGCTTGA
GTTCCTGGAATATTGACCCCTCAGAGCTTGTGTCAGAGTCTCCCCCACGGATGTCCACTA
CTGAGAAGGGTTCCAGCTGCTCCAGACAGGTGGTGCAAACTGTGTGCAAACAAGGCAAGA
GCCTGGGGGTCTTGAAAAGCCCCATGCACAAAGGGCAGTGAGTCTTGCCTGAGTTCCCAG
GTGTGGTCCCACATGGGAGTTTGCCCACGAAGCCCAGCAGCGGCTTCCTGTTTTCTGCCA
TATTCCCCACGTTTGTGCTCAGTATCAGAAAAGACCCTGGGCAATTCTATAATGAAGTAG
TAGGTGATTAGGCCCACCCAAAGAGAAAGTTTCCAAAACTTGAACAGAGACCATGGGGAC
TCTCTCTTTGGCAAATCAAAGGGCAAAAAGTTAGAGGATTCCTTAAAGGAACCGCCCACA
GAACTACTCAACAGGGCCCCCTCCTTTGCAAGGCATCCCATACCAGACACGCCCACGGCC
TCCTCTAACCCCCTAAATCCTCCGAGGAGGCGCTTCCAGGTCTAAGTCTCCTGCTAGACT
TCTGAACCCTGCATCTCTAACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAGCATCACATACCGGACAGAGGATGCCGATCTGCGGCTGCAGAGTGCATGGCTTGA
GTTCCTGGAATATTGACCCCTCAGAGCTTGTGTCAGAGTCTCCCCCACGGATGTCCACTA
CTGAGAAGGGTTCCAGCTGCTCCAGACAGGTGGTGCAAACTGTGTGCAAACAAGGCAAGA
GCCTGGGGGTCTTGAAAAGCCCCATGCACAAAGGGCAGTGAGTCTTGCCTGAGTTCCCAG
GTGTGGTCCCACATGGGAGTTTGCCCACGAAGCCCAGCAGCGGCTTCCTGTTTTCTGCCA
TATTCCCCACGTTTGTGCTCAGTATCAGAAAAGACCCTGGGCAATTCTATAATGAAGTAG
TAGGTGATTAGGCCCACCCAAAGAGAAAGTTTCCAAAACTTGAACAGAGACCATGGGGAC
TCTCTCTTTGGCAAATCAAAGGGCAAAAAGTTAGAGGATTCCTTAAAGGAACCGCCCACA
GAACTACTCAACAGGGCCCCCTCCTTTGCAAGGCATCCCATACCAGACACGCCCACGGCC
TCCTCTAACCCCCTAAATCCTCCGAGGAGGCGCTTCCAGGTCTAAGTCTCCTGCTAGACT
TCTGAACCCTGCATCTCTAACACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-279, - strand, RNAz p=0.993395
               

               
               360-476, - strand, RNAz p=0.604323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, - strand, RNAz p=0.993395
               

               
               360-476, - strand, RNAz p=0.604323

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               291-434, - strand, RNAmicro p=0.999848

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               291-434, - strand, RNAmicro p=0.999848

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC034943, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC034943, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-596, gnl|bosTau2|chr9 (64087367-64087964)
               

               
               1-596, gnl|Hg17|chr1 (117375565-117376162)
               

               
               1-596, gnl|Mm7|chr3 (100718029-100717437)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr9 (64087367-64087964)
               

               
               1-596, gnl|Hg17|chr1 (117375565-117376162)
               

               
               1-596, gnl|Mm7|chr3 (100718029-100717437)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	120-279, - strand, RNAz p=0.993395
	360-476, - strand, RNAz p=0.604323

	1-596, gnl\|bosTau2\|chr9 (64087367-64087964)
	1-596, gnl\|Hg17\|chr1 (117375565-117376162)
	1-596, gnl\|Mm7\|chr3 (100718029-100717437)