Non-Coding RNA Search

Ss1.1-rebs23c_i9.5

Sequence:


               
               ACTTTGGGGCACTTCTGTTTTCCTGAGAGCTACTCTGTTTTCTTTTAAAAGAGTCTGAAC
AACCCAGTCCTGCAAGTTCCAGCTCCAGTTCCAGCTCCAGCTTTACACCGTCCCAGACCA
GGCAACAAGGTCCTTTAAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAAGAGG
AATCAGATGAGGCAGAGGATAATGACAATGACTCCGAAATGGAGAGACCTGTAAATAGAG
GAGGCAGCCGAAGTCGCAGAGTTAGCTTAAGTGATGGCAGCGATAGTGAAAGCAGTTCCG
CTTCCTCACCCCTCCATCATGAACCCCCGCCACCCTTATTAAAAACCAACAACAACCAGA
TTCTTGAAGTGAAAAGTCCAATAAAGCAAAGCAAGTCAGATAAGCAAATAAAGAATGGTG
AATGTGACAAGGCATACCTAGATGAACTGGTAGAGCTTCACAGAAGGTTGATGACACTGA
GGGAAAGACACATTCTGCAGCAGATTGTGAACCTTATAGAAGAGACTGGACACTTTCATA
TCACAAACACAACGTTTGATTTTGACCTTTGCTCGCTGGACAAAACCACAGTCCGTAAAC
TACAGAGTTACCTGGAAACATCTGGAACATCCTGAGGATACAACAACTGGATGCATCAAA
AACTATTCTTTTTTTTTTGGTTGTGATTTTTTTTTCTTGTTTGTTTATATGAAAACACTC
AGAATGATGCAACCAAAAGGGAAAAAATAAAAATCAAACAACCTTCAGCTTTATTTTTCT
TTAAAGCCAGTCATCATCTCTTGATAAAGGAGAGGTTAAGAAAACCAGCCTCAGCGGACC
ACTCTTCTCTCCAAGGAAATTCTCTCCGGGAAGAGTTAGCCTGGATAGCCTTGAAAACAA
ACAGATCAAACACAATACAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGGGGCACTTCTGTTTTCCTGAGAGCTACTCTGTTTTCTTTTAAAAGAGTCTGAAC
AACCCAGTCCTGCAAGTTCCAGCTCCAGTTCCAGCTCCAGCTTTACACCGTCCCAGACCA
GGCAACAAGGTCCTTTAAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAAGAGG
AATCAGATGAGGCAGAGGATAATGACAATGACTCCGAAATGGAGAGACCTGTAAATAGAG
GAGGCAGCCGAAGTCGCAGAGTTAGCTTAAGTGATGGCAGCGATAGTGAAAGCAGTTCCG
CTTCCTCACCCCTCCATCATGAACCCCCGCCACCCTTATTAAAAACCAACAACAACCAGA
TTCTTGAAGTGAAAAGTCCAATAAAGCAAAGCAAGTCAGATAAGCAAATAAAGAATGGTG
AATGTGACAAGGCATACCTAGATGAACTGGTAGAGCTTCACAGAAGGTTGATGACACTGA
GGGAAAGACACATTCTGCAGCAGATTGTGAACCTTATAGAAGAGACTGGACACTTTCATA
TCACAAACACAACGTTTGATTTTGACCTTTGCTCGCTGGACAAAACCACAGTCCGTAAAC
TACAGAGTTACCTGGAAACATCTGGAACATCCTGAGGATACAACAACTGGATGCATCAAA
AACTATTCTTTTTTTTTTGGTTGTGATTTTTTTTTCTTGTTTGTTTATATGAAAACACTC
AGAATGATGCAACCAAAAGGGAAAAAATAAAAATCAAACAACCTTCAGCTTTATTTTTCT
TTAAAGCCAGTCATCATCTCTTGATAAAGGAGAGGTTAAGAAAACCAGCCTCAGCGGACC
ACTCTTCTCTCCAAGGAAATTCTCTCCGGGAAGAGTTAGCCTGGATAGCCTTGAAAACAA
ACAGATCAAACACAATACAAGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5VV08_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VV08_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               128-247, + strand, RNAz p=0.994656
               

               
               723-880, - strand, RNAz p=0.645227

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-247, + strand, RNAz p=0.994656
               

               
               723-880, - strand, RNAz p=0.645227

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC036089, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC036089, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               128-259, gnl|bosTau2|chr18 (53732451-53732320)
               

               
               128-259, gnl|canFam2|chr11 (42973196-42973490)
               

               
               128-259, gnl|dasNov1|scaffold_826 (99824-100111)
               

               
               128-259, gnl|echTel1|scaffold_292483 (97914-97652)
               

               
               128-259, gnl|galGal2|chrZ (13239328-13239062)
               

               
               128-259, gnl|hg17|chr9 (20353464-20353748)
               

               
               128-259, gnl|Hg17|chr9 (20353605-20353474)
               

               
               128-259, gnl|loxAfr1|scaffold_318 (176438-176699)
               

               
               128-259, gnl|mm7|chr4 (87195575-87195832)
               

               
               128-259, gnl|Mm7|chr4 (87195710-87195579)
               

               
               128-259, gnl|monDom2|scaffold_19 (15724503-15724808)
               

               
               128-259, gnl|oryCun1|scaffold_210244 (82504-82775)
               

               
               128-259, gnl|panTro1|chr11 (20622936-20623220)
               

               
               128-259, gnl|rheMac2|chr15 (56640903-56640619)
               

               
               128-259, gnl|rn3|chr5 (107091490-107091744)
               


               
               502-924, gnl|bosTau2|chr18 (53714406-53713981)
               

               
               502-924, gnl|Hg17|chr9 (20336574-20336135)
               

               
               502-924, gnl|Mm7|chr4 (87177874-87177462)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-259, gnl|bosTau2|chr18 (53732451-53732320)
               

               
               128-259, gnl|canFam2|chr11 (42973196-42973490)
               

               
               128-259, gnl|dasNov1|scaffold_826 (99824-100111)
               

               
               128-259, gnl|echTel1|scaffold_292483 (97914-97652)
               

               
               128-259, gnl|galGal2|chrZ (13239328-13239062)
               

               
               128-259, gnl|hg17|chr9 (20353464-20353748)
               

               
               128-259, gnl|Hg17|chr9 (20353605-20353474)
               

               
               128-259, gnl|loxAfr1|scaffold_318 (176438-176699)
               

               
               128-259, gnl|mm7|chr4 (87195575-87195832)
               

               
               128-259, gnl|Mm7|chr4 (87195710-87195579)
               

               
               128-259, gnl|monDom2|scaffold_19 (15724503-15724808)
               

               
               128-259, gnl|oryCun1|scaffold_210244 (82504-82775)
               

               
               128-259, gnl|panTro1|chr11 (20622936-20623220)
               

               
               128-259, gnl|rheMac2|chr15 (56640903-56640619)
               

               
               128-259, gnl|rn3|chr5 (107091490-107091744)
               


               
               502-924, gnl|bosTau2|chr18 (53714406-53713981)
               

               
               502-924, gnl|Hg17|chr9 (20336574-20336135)
               

               
               502-924, gnl|Mm7|chr4 (87177874-87177462)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ste (0.540833)
               

               
               bfe (0.299715)
               

               
               ldo (0.194005)
               

               
               tbr (0.154178)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.540833)
               

               
               bfe (0.299715)
               

               
               ldo (0.194005)
               

               
               tbr (0.154178)
               

               
               ebs (0.118301)

	128-247, + strand, RNAz p=0.994656
	723-880, - strand, RNAz p=0.645227

	128-259, gnl\|bosTau2\|chr18 (53732451-53732320)
	128-259, gnl\|canFam2\|chr11 (42973196-42973490)
	128-259, gnl\|dasNov1\|scaffold_826 (99824-100111)
	128-259, gnl\|echTel1\|scaffold_292483 (97914-97652)
	128-259, gnl\|galGal2\|chrZ (13239328-13239062)
	128-259, gnl\|hg17\|chr9 (20353464-20353748)
	128-259, gnl\|Hg17\|chr9 (20353605-20353474)
	128-259, gnl\|loxAfr1\|scaffold_318 (176438-176699)
	128-259, gnl\|mm7\|chr4 (87195575-87195832)
	128-259, gnl\|Mm7\|chr4 (87195710-87195579)
	128-259, gnl\|monDom2\|scaffold_19 (15724503-15724808)
	128-259, gnl\|oryCun1\|scaffold_210244 (82504-82775)
	128-259, gnl\|panTro1\|chr11 (20622936-20623220)
	128-259, gnl\|rheMac2\|chr15 (56640903-56640619)
	128-259, gnl\|rn3\|chr5 (107091490-107091744)

	502-924, gnl\|bosTau2\|chr18 (53714406-53713981)
	502-924, gnl\|Hg17\|chr9 (20336574-20336135)
	502-924, gnl\|Mm7\|chr4 (87177874-87177462)

	ste (0.540833)
	bfe (0.299715)
	ldo (0.194005)
	tbr (0.154178)
	ebs (0.118301)