Non-Coding RNA Search

Ss1.1-rebs23c_k18.5

Sequence:


               
               CCTGGGCGGCTTCCCTGAAGGCCGCGGAGCACTGTTGGGATGAAAGCTGAGTTAGGAGAA
TCCCAGTAGAGGGCTAAAAACACGCAAAGCAGCAAATGGTTGCTCTGAGTTAAAATCAGC
TACTGACCTTGGCTTACCTCAGAGGACTCCTTTCCTTGCGAGAAACAGAGATAAAAGAAC
AGCCTGGCCAGCCCTTCCTCAGGCCCCTTTCCTCTGCTGGCGTGGGCCCTGTGAGCTGGC
TCCCTAGTTAGTCCGAAGTGTTAGAGCGCCGGCTCCCTCCCGTTGAAAAGAGGCATCCAG
GCCGAATGACCACGTCGCCTGCCTTTCTGCCCACCTTCGGTTTCCTGCCCCGTGACAGGC
GCTGCTTGTTGAGGCCAGCAGGTGAGCTCCATGTGCACAATGGGTGCATTGTATCTTTTT
AAAGGGCACAGTTAATGTCTCTCTTTTTGTGGACAGAATATGAAGAGGTAGAGGTTGATT
AATAAGACTTTAATTTTGTTGGCTCTTGCAAGGTTGCATCAGTTTTTGAAAATTTAAAAT
GTTAGAATAATTACCATGTGAAGAACTTCTTAATGTTCATGCTTTGGAGAGTGTCGTAGC
CCCAGACGTGTAGTTGCCCTTAGGTCCTAGGAATAGTGTTAAAAATTAATTCCCCCGTTC
ACTCTGCTCCCTATTTGGGGAAGAAAATGCCCATAGACATTAATTTTTCAAATTGGTACT
CGTTTTGTTGTACGATTACATATTTTCCGTGCTTCTGTTAATTGGATTACTTCCCGCCTC
TTGCTATTCCCAGGTTATTTCAGCCTCCCCACCACCCCTGCCAGCTGGCAGTTACGTTCA
TCTTAACCTTATCTTCTAAGGATGACTTGAGATCTGCTCACAGGCAATGTTGACATGAAC
AGGGCATTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCGGCTTCCCTGAAGGCCGCGGAGCACTGTTGGGATGAAAGCTGAGTTAGGAGAA
TCCCAGTAGAGGGCTAAAAACACGCAAAGCAGCAAATGGTTGCTCTGAGTTAAAATCAGC
TACTGACCTTGGCTTACCTCAGAGGACTCCTTTCCTTGCGAGAAACAGAGATAAAAGAAC
AGCCTGGCCAGCCCTTCCTCAGGCCCCTTTCCTCTGCTGGCGTGGGCCCTGTGAGCTGGC
TCCCTAGTTAGTCCGAAGTGTTAGAGCGCCGGCTCCCTCCCGTTGAAAAGAGGCATCCAG
GCCGAATGACCACGTCGCCTGCCTTTCTGCCCACCTTCGGTTTCCTGCCCCGTGACAGGC
GCTGCTTGTTGAGGCCAGCAGGTGAGCTCCATGTGCACAATGGGTGCATTGTATCTTTTT
AAAGGGCACAGTTAATGTCTCTCTTTTTGTGGACAGAATATGAAGAGGTAGAGGTTGATT
AATAAGACTTTAATTTTGTTGGCTCTTGCAAGGTTGCATCAGTTTTTGAAAATTTAAAAT
GTTAGAATAATTACCATGTGAAGAACTTCTTAATGTTCATGCTTTGGAGAGTGTCGTAGC
CCCAGACGTGTAGTTGCCCTTAGGTCCTAGGAATAGTGTTAAAAATTAATTCCCCCGTTC
ACTCTGCTCCCTATTTGGGGAAGAAAATGCCCATAGACATTAATTTTTCAAATTGGTACT
CGTTTTGTTGTACGATTACATATTTTCCGTGCTTCTGTTAATTGGATTACTTCCCGCCTC
TTGCTATTCCCAGGTTATTTCAGCCTCCCCACCACCCCTGCCAGCTGGCAGTTACGTTCA
TCTTAACCTTATCTTCTAAGGATGACTTGAGATCTGCTCACAGGCAATGTTGACATGAAC
AGGGCATTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               70-189, - strand, RNAz p=0.79264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-189, - strand, RNAz p=0.79264

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-189, gnl|bosTau2|chr25 (23793678-23793841)
               

               
               24-189, gnl|Mm7|chr5 (129297982-129298133)
               


               
               423-912, gnl|bosTau2|chr25 (23794558-23795026)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-189, gnl|bosTau2|chr25 (23793678-23793841)
               

               
               24-189, gnl|Mm7|chr5 (129297982-129298133)
               


               
               423-912, gnl|bosTau2|chr25 (23794558-23795026)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               pan (0.23596)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	24-189, gnl\|bosTau2\|chr25 (23793678-23793841)
	24-189, gnl\|Mm7\|chr5 (129297982-129298133)

	423-912, gnl\|bosTau2\|chr25 (23794558-23795026)

	pan (0.23596)
	hea (0.204499)
	cki (0.165235)
	tbr (0.154178)
	cag (0.151194)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)