Non-Coding RNA Search

Ss1.1-rebs23c_l2.5

Sequence:


               
               CAGGCCAGCCACCGATGGGGATCGACATTGCCTCGGCGCCGGCTCTGCAGCAGTACCGCA
CTAGCGCCGGCTCCCCAGCCAACCAGTCTCCCACCTCGCCCGTCTCCAATCAAGGCTTCT
CCCCTGGGAGCTCCCCACAACTGGAGCAGTTCAACATGATGGAGAATGCCATCAGCTCCA
GCAGTCTGTACAGCCCGGGCTCGACGCTCAACTATTCCCAGGCGGCCATGATGGGCCTCT
CGGGCAGCCCTGGGAGCCTGCCGGACACACAGCAGCTGGGCTACCCCAGCCACAGCAGCA
TCCCCAACATCATCCTCACAGTGACAGGAGAGTCCCCTCCTAGCCTCTCTAAAGAACTGA
CCAGCACGCTGGCTGGGGTCGGTGACGTCAGCTTCGACTCTGACAACCAGTTCCCACTGG
ACGAACTCAAGATTGACCCCTTGACCTTGGACGGACTGCACATGCTCAATGACCCAGACA
TGGTCCTGGCTGACCCGGCCACTGAAGACACCTTCCGGATGGACCGTCTGTGAGCAGCAC
GCCCGGCACACTGCCGCCCAGCCCCCGGCTCCGTCACCCCACCGGTCAGTGGTCCCGACG
GTGTCTCCCTGAGCCTGGGGACGGCGGCGCTCCGTCCCTCGCAAACGGCCGAGCTTGTGA
TTCTGAGCTTGCAATGCCGCCAAGCGCCCCGGCCCGCCCATCCCCCCAACCCGGTTGTCC
ACCTCCCGCGTGAGGCCCTCACGTCGCCCCCGCGGACCCTCCCTGCTCACTTGTCCCCCC
TGTAAGATGCGGAAAGCGTGCTGGGCAGGGCCGCCGGGCTCGGGGGGTGGGGCACTGTGC
TCTGCGACGCGGTGGGCTGAGGGGCATCTTCCGACTGTTGTCCAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCAGCCACCGATGGGGATCGACATTGCCTCGGCGCCGGCTCTGCAGCAGTACCGCA
CTAGCGCCGGCTCCCCAGCCAACCAGTCTCCCACCTCGCCCGTCTCCAATCAAGGCTTCT
CCCCTGGGAGCTCCCCACAACTGGAGCAGTTCAACATGATGGAGAATGCCATCAGCTCCA
GCAGTCTGTACAGCCCGGGCTCGACGCTCAACTATTCCCAGGCGGCCATGATGGGCCTCT
CGGGCAGCCCTGGGAGCCTGCCGGACACACAGCAGCTGGGCTACCCCAGCCACAGCAGCA
TCCCCAACATCATCCTCACAGTGACAGGAGAGTCCCCTCCTAGCCTCTCTAAAGAACTGA
CCAGCACGCTGGCTGGGGTCGGTGACGTCAGCTTCGACTCTGACAACCAGTTCCCACTGG
ACGAACTCAAGATTGACCCCTTGACCTTGGACGGACTGCACATGCTCAATGACCCAGACA
TGGTCCTGGCTGACCCGGCCACTGAAGACACCTTCCGGATGGACCGTCTGTGAGCAGCAC
GCCCGGCACACTGCCGCCCAGCCCCCGGCTCCGTCACCCCACCGGTCAGTGGTCCCGACG
GTGTCTCCCTGAGCCTGGGGACGGCGGCGCTCCGTCCCTCGCAAACGGCCGAGCTTGTGA
TTCTGAGCTTGCAATGCCGCCAAGCGCCCCGGCCCGCCCATCCCCCCAACCCGGTTGTCC
ACCTCCCGCGTGAGGCCCTCACGTCGCCCCCGCGGACCCTCCCTGCTCACTTGTCCCCCC
TGTAAGATGCGGAAAGCGTGCTGGGCAGGGCCGCCGGGCTCGGGGGGTGGGGCACTGTGC
TCTGCGACGCGGTGGGCTGAGGGGCATCTTCCGACTGTTGTCCAGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868254|ref|XP_613178.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868254|ref|XP_613178.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-140, - strand, RNAz p=0.827911

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-140, - strand, RNAz p=0.827911

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               35-140, gnl|bosTau2|chr7 (2207699-2207804)
               

               
               35-140, gnl|canFam2|chr20 (47328297-47328192)
               

               
               35-140, gnl|danRer3|chrNA (81785636-81785725)
               

               
               35-140, gnl|fr1|chrUn (88762196-88762106)
               

               
               35-140, gnl|galGal2|chr28 (3183282-3183187)
               

               
               35-140, gnl|Hg17|chr19 (18743251-18743356)
               

               
               35-140, gnl|hg17|chr2 (52710715-52710821)
               

               
               35-140, gnl|mm7|chr8 (68846513-68846414)
               

               
               35-140, gnl|Mm7|chr8 (68846514-68846412)
               

               
               35-140, gnl|monDom2|scaffold_75 (1374225-1374316)
               

               
               35-140, gnl|panTro1|chr12 (54818693-54818799)
               

               
               35-140, gnl|rheMac2|chr13 (52803443-52803548)
               

               
               35-140, gnl|tetNig1|chr1 (14625946-14626038)
               

               
               35-140, gnl|xenTro1|scaffold_1072 (207532-207635)
               


               
               319-888, gnl|bosTau2|chr7 (2214117-2214676)
               

               
               319-888, gnl|Hg17|chr19 (18748978-18749616)
               

               
               319-888, gnl|Mm7|chr8 (68841548-68840891)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-140, gnl|bosTau2|chr7 (2207699-2207804)
               

               
               35-140, gnl|canFam2|chr20 (47328297-47328192)
               

               
               35-140, gnl|danRer3|chrNA (81785636-81785725)
               

               
               35-140, gnl|fr1|chrUn (88762196-88762106)
               

               
               35-140, gnl|galGal2|chr28 (3183282-3183187)
               

               
               35-140, gnl|Hg17|chr19 (18743251-18743356)
               

               
               35-140, gnl|hg17|chr2 (52710715-52710821)
               

               
               35-140, gnl|mm7|chr8 (68846513-68846414)
               

               
               35-140, gnl|Mm7|chr8 (68846514-68846412)
               

               
               35-140, gnl|monDom2|scaffold_75 (1374225-1374316)
               

               
               35-140, gnl|panTro1|chr12 (54818693-54818799)
               

               
               35-140, gnl|rheMac2|chr13 (52803443-52803548)
               

               
               35-140, gnl|tetNig1|chr1 (14625946-14626038)
               

               
               35-140, gnl|xenTro1|scaffold_1072 (207532-207635)
               


               
               319-888, gnl|bosTau2|chr7 (2214117-2214676)
               

               
               319-888, gnl|Hg17|chr19 (18748978-18749616)
               

               
               319-888, gnl|Mm7|chr8 (68841548-68840891)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	35-140, gnl\|bosTau2\|chr7 (2207699-2207804)
	35-140, gnl\|canFam2\|chr20 (47328297-47328192)
	35-140, gnl\|danRer3\|chrNA (81785636-81785725)
	35-140, gnl\|fr1\|chrUn (88762196-88762106)
	35-140, gnl\|galGal2\|chr28 (3183282-3183187)
	35-140, gnl\|Hg17\|chr19 (18743251-18743356)
	35-140, gnl\|hg17\|chr2 (52710715-52710821)
	35-140, gnl\|mm7\|chr8 (68846513-68846414)
	35-140, gnl\|Mm7\|chr8 (68846514-68846412)
	35-140, gnl\|monDom2\|scaffold_75 (1374225-1374316)
	35-140, gnl\|panTro1\|chr12 (54818693-54818799)
	35-140, gnl\|rheMac2\|chr13 (52803443-52803548)
	35-140, gnl\|tetNig1\|chr1 (14625946-14626038)
	35-140, gnl\|xenTro1\|scaffold_1072 (207532-207635)

	319-888, gnl\|bosTau2\|chr7 (2214117-2214676)
	319-888, gnl\|Hg17\|chr19 (18748978-18749616)
	319-888, gnl\|Mm7\|chr8 (68841548-68840891)