Non-Coding RNA Search

Ss1.1-rebs23c_m10.5

Sequence:


               
               GTGGTCGTGACTTTTCAACAACCTAGCACCATGTTGGACACATCCTCATCCACCCTCCTA
GCTCTGCTGTCAGGCTGCCCCAAACGGCTCCGTCCCCCATCTGTCCTCTTCTGGGGGCTG
TGCCCTGCAGGGCCCCATCCAACCCGTGTGTCTTCGGAGACGCAGAGGGCCCATCTGTGT
AACGACTGAGCTGGTGTGTGGTGTCACGGTCAGGTCTCCTGCTTCCTCTCCTCCTGTGTC
TGGGCACAGCTCACACCAGGAGTGTGTCCTTTTGCCCATGGCCCTTCCTTCCCTTGCACC
ATCTGTCCCGGGTGCGTGGAGCAGAGCGGCAATGGGGCCCCGGGGTTGGAGCACACCCAG
GGCTTGGAAGTCGTAGCAGAGAGCTGGGGCTCCAACACCGAGGTGAGGGCAGAGGAGAAG
GGACCCAGAGCGGATGTGGACCTGGGCCCTCTCCACTCACCGGGGGAATGACAGACGGAC
GGATGGACTGCCGGCAGGATGCCACTCACCAGCCTAACACACAGACCTCCGCCAACAACA
GTGGCAGGCGGGAGAGGTGGCCTGACCCAACCATGTCCCCTCATTCAGTGGTGTATTTCA
ACCAGCCTAACAATTCCAACCTGTGTAACTTGATGTACATTTGCTACAGCCAGCCGGGCA
CAGCCCGTGTACCTCTCTGTACGTGTGTGTGTGTTGTGACCGGCCTAAGTAGTTAGCATA
ACTCAAGATTTGCTGAAATGCAATCCTCCATCGGAGAAAATAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCGTGACTTTTCAACAACCTAGCACCATGTTGGACACATCCTCATCCACCCTCCTA
GCTCTGCTGTCAGGCTGCCCCAAACGGCTCCGTCCCCCATCTGTCCTCTTCTGGGGGCTG
TGCCCTGCAGGGCCCCATCCAACCCGTGTGTCTTCGGAGACGCAGAGGGCCCATCTGTGT
AACGACTGAGCTGGTGTGTGGTGTCACGGTCAGGTCTCCTGCTTCCTCTCCTCCTGTGTC
TGGGCACAGCTCACACCAGGAGTGTGTCCTTTTGCCCATGGCCCTTCCTTCCCTTGCACC
ATCTGTCCCGGGTGCGTGGAGCAGAGCGGCAATGGGGCCCCGGGGTTGGAGCACACCCAG
GGCTTGGAAGTCGTAGCAGAGAGCTGGGGCTCCAACACCGAGGTGAGGGCAGAGGAGAAG
GGACCCAGAGCGGATGTGGACCTGGGCCCTCTCCACTCACCGGGGGAATGACAGACGGAC
GGATGGACTGCCGGCAGGATGCCACTCACCAGCCTAACACACAGACCTCCGCCAACAACA
GTGGCAGGCGGGAGAGGTGGCCTGACCCAACCATGTCCCCTCATTCAGTGGTGTATTTCA
ACCAGCCTAACAATTCCAACCTGTGTAACTTGATGTACATTTGCTACAGCCAGCCGGGCA
CAGCCCGTGTACCTCTCTGTACGTGTGTGTGTGTTGTGACCGGCCTAAGTAGTTAGCATA
ACTCAAGATTTGCTGAAATGCAATCCTCCATCGGAGAAAATAAAAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               336-452, - strand, RNAz p=0.56967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-452, - strand, RNAz p=0.56967

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-768, gnl|bosTau2|chr25 (16152536-16153272)
               

               
               7-768, gnl|Hg17|chr16 (15588557-15589304)
               

               
               7-768, gnl|Mm7|chr16 (13646779-13647494)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-768, gnl|bosTau2|chr25 (16152536-16153272)
               

               
               7-768, gnl|Hg17|chr16 (15588557-15589304)
               

               
               7-768, gnl|Mm7|chr16 (13646779-13647494)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	7-768, gnl\|bosTau2\|chr25 (16152536-16153272)
	7-768, gnl\|Hg17\|chr16 (15588557-15589304)
	7-768, gnl\|Mm7\|chr16 (13646779-13647494)