Ss1.1-rebs23c_o15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGACAGCCTCGCGGACGCGGCGCCGTTACTCGTAGTTGGGCGGCGGCGCAGGCGGCGG CGGCGGCGCAGGCGGCATAGCGCTCAGCGCACACCTAGCAGCAGCAGTAGCGGCGGTAGC GGAGGCACCCCTGCGGTCACAGCCCCTGCGCTGGTGCAGCCACCTTCGCGCTCTCTGCTC TTCCTCCCTTCGTTCACACCATGGCTGATCAGCTGACCGAAGAACAGATTGCTGAATTCA AGGAAGCTTTCTCCCTATTTGACAAAGACGGCGATGGCACCATCACAACAAAGGAACTTG GAACTGTCATGAGGTCATTGGGTCAGAACCCGACAGAAGCTGAGTTGCAGGATATGATCA ATGAGGTGGACGCTGATGGTAATGGCACCATTGACTTCCCAGAATTTTTGACTATGATGG CTAGGAAAATGAAAGACACAGACAGCGAAGAAGAAATCCGCGAGGCATTCCGAGTCTTTG ACAAGGATGGCAATGGCTACATCAGTGCTGCAGAACTACGTCACGTCATGACAAACTTAG GAGAAAAACTAACAGACGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGAG ATGGACAAGTCAACTACGAAGAATTCGTACAGATGATGACTGCAAAATGAAGACCTACTT TCAACTCCTTTTTCCCCCCTCTAGAAGAATCAAATTGAATCTTTTACTTACCTCTTGCAA AAAAAAAAAAAAAAAAAAGAAAAAGTTCATTTACTCATTCTGTTTCTATATAGCAAAACT GAATGTCAGAAGTACCTTCTGTCCACACACACAAAAAATCTGCATGTATTGGTTGGTGGT CCTGTCCCCTAAAGATCAAGCTACACATCAGTTTTCCGATATAAATACTTGTCCTACCTT AATGATAAGGAAACACTTAGTGGACTCCTTGCAGGTCCATTTGCTCATGATTAATACACT GTTTGGGCTGGCCAGTTTTTCATGCATGCAGCTTGACAATTGAGCACAGTCAGGCGTTTG TATTAAAAACGAAAAATGAAAAAACAAATTCAAAACCTACTCAAAGGGGTTCTAGTTCAG TTTGTTAGTATAAATTGTCCTAGCTGGTTTACTGAAAACAGACATGTAAAATTGGTGCGC CTCAGGATGCTGTGCAGCGAAATGGGTGGAGGATAAACTCCAGGCGTGGCCCCATTGGCA GGATGGCCCTCTTGTAACTTCCCTGTGCCCCGACCCACGGTGGCCATGACACACCCTGGT GGCATGCCTGCGAGGGTTGGTTTAAGCATTGTCTGCGTTGTGCTAGAGCGGAATGGGTGT CAGGCTGTCACCGTTCATATCAATTTTTAAAAAGAAACCTTTATCAAGGGAGCATCTTTG GACTCTCTGTTTTTAAAACCTTCTGAACCTTGACTTGGAGCCAGCAGAGTAGGCTGTGGC TGTGGACTTCAGCACAACCATCAACATTGCTGTTCAAGAAATTACAATTTACGTCCATTC CAAGTTGTAAATGCTAGTCTTTTTTTTTTTTTTTTTAAGACCATTAACAAAAGACCATTA TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGACAGCCTCGCGGACGCGGCGCCGTTACTCGTAGTTGGGCGGCGGCGCAGGCGGCGG CGGCGGCGCAGGCGGCATAGCGCTCAGCGCACACCTAGCAGCAGCAGTAGCGGCGGTAGC GGAGGCACCCCTGCGGTCACAGCCCCTGCGCTGGTGCAGCCACCTTCGCGCTCTCTGCTC TTCCTCCCTTCGTTCACACCATGGCTGATCAGCTGACCGAAGAACAGATTGCTGAATTCA AGGAAGCTTTCTCCCTATTTGACAAAGACGGCGATGGCACCATCACAACAAAGGAACTTG GAACTGTCATGAGGTCATTGGGTCAGAACCCGACAGAAGCTGAGTTGCAGGATATGATCA ATGAGGTGGACGCTGATGGTAATGGCACCATTGACTTCCCAGAATTTTTGACTATGATGG CTAGGAAAATGAAAGACACAGACAGCGAAGAAGAAATCCGCGAGGCATTCCGAGTCTTTG ACAAGGATGGCAATGGCTACATCAGTGCTGCAGAACTACGTCACGTCATGACAAACTTAG GAGAAAAACTAACAGACGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGAG ATGGACAAGTCAACTACGAAGAATTCGTACAGATGATGACTGCAAAATGAAGACCTACTT TCAACTCCTTTTTCCCCCCTCTAGAAGAATCAAATTGAATCTTTTACTTACCTCTTGCAA AAAAAAAAAAAAAAAAAAGAAAAAGTTCATTTACTCATTCTGTTTCTATATAGCAAAACT GAATGTCAGAAGTACCTTCTGTCCACACACACAAAAAATCTGCATGTATTGGTTGGTGGT CCTGTCCCCTAAAGATCAAGCTACACATCAGTTTTCCGATATAAATACTTGTCCTACCTT AATGATAAGGAAACACTTAGTGGACTCCTTGCAGGTCCATTTGCTCATGATTAATACACT GTTTGGGCTGGCCAGTTTTTCATGCATGCAGCTTGACAATTGAGCACAGTCAGGCGTTTG TATTAAAAACGAAAAATGAAAAAACAAATTCAAAACCTACTCAAAGGGGTTCTAGTTCAG TTTGTTAGTATAAATTGTCCTAGCTGGTTTACTGAAAACAGACATGTAAAATTGGTGCGC CTCAGGATGCTGTGCAGCGAAATGGGTGGAGGATAAACTCCAGGCGTGGCCCCATTGGCA GGATGGCCCTCTTGTAACTTCCCTGTGCCCCGACCCACGGTGGCCATGACACACCCTGGT GGCATGCCTGCGAGGGTTGGTTTAAGCATTGTCTGCGTTGTGCTAGAGCGGAATGGGTGT CAGGCTGTCACCGTTCATATCAATTTTTAAAAAGAAACCTTTATCAAGGGAGCATCTTTG GACTCTCTGTTTTTAAAACCTTCTGAACCTTGACTTGGAGCCAGCAGAGTAGGCTGTGGC TGTGGACTTCAGCACAACCATCAACATTGCTGTTCAAGAAATTACAATTTACGTCCATTC CAAGTTGTAAATGCTAGTCTTTTTTTTTTTTTTTTTAAGACCATTAACAAAAGACCATTA TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 229-347, + strand, RNAz p=0.651648 | |
| 229-347, - strand, RNAz p=0.651648 | |
| 229-338, + strand, RNAz p=0.6263 | |
| 229-338, - strand, RNAz p=0.6263 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 229-347, + strand, RNAz p=0.651648 | |
| 229-347, - strand, RNAz p=0.651648 | |
| 229-338, + strand, RNAz p=0.6263 | |
| 229-338, - strand, RNAz p=0.6263 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC007965, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 229-386, gnl|bosTau2|chr10 (69309841-69309684) | |
| 229-386, gnl|canFam2|chr8 (64442345-64442523) | |
| 229-386, gnl|danRer3|chr17 (32053103-32052950) | |
| 229-386, gnl|dasNov1|scaffold_43485 (248-426) | |
| 229-386, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 229-386, gnl|fr1|chrUn (137217825-137217993) | |
| 229-386, gnl|galGal2|chr5 (40675653-40675818) | |
| 229-386, gnl|hg17|chr14 (89937321-89937499) | |
| 229-386, gnl|Hg17|chr14 (89937350-89937507) | |
| 229-386, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 229-386, gnl|mm7|chr12 (97698900-97699070) | |
| 229-386, gnl|Mm7|chr12 (97698921-97699078) | |
| 229-386, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 229-386, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 229-386, gnl|panTro1|chr15 (90203430-90203608) | |
| 229-386, gnl|rheMac2|chr7 (153612831-153613009) | |
| 229-386, gnl|rn3|chr6 (124485668-124485846) | |
| 229-386, gnl|tetNig1|chr14 (8622867-8623012) | |
| 229-386, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 620-1154, gnl|bosTau2|chr10 (69306776-69306251) | |
| 620-1154, gnl|Hg17|chr14 (89940784-89941302) | |
| 620-1154, gnl|Mm7|chr12 (97701750-97702274) | |
| 1286-1533, gnl|bosTau2|chr10 (69306150-69305904) | |
| 1286-1533, gnl|canFam2|chr1 (37990418-37990848) | |
| 1286-1533, gnl|dasNov1|scaffold_2363 (44264-43851) | |
| 1286-1533, gnl|echTel1|scaffold_162327 (4347-3916) | |
| 1286-1533, gnl|galGal2|chr5 (40680075-40680494) | |
| 1286-1533, gnl|hg17|chr10 (71102129-71102579) | |
| 1286-1533, gnl|Hg17|chr14 (89941433-89941682) | |
| 1286-1533, gnl|loxAfr1|scaffold_3280 (42276-41852) | |
| 1286-1533, gnl|mm7|chr12 (97702219-97702633) | |
| 1286-1533, gnl|Mm7|chr12 (97702396-97702641) | |
| 1286-1533, gnl|monDom2|scaffold_8 (35055336-35054895) | |
| 1286-1533, gnl|oryCun1|scaffold_198333 (101960-101536) | |
| 1286-1533, gnl|panTro1|chr8 (72262588-72263038) | |
| 1286-1533, gnl|rheMac2|chr9 (67338593-67338145) | |
| 1286-1533, gnl|rn3|chr6 (124488975-124489385) | |
| 1286-1533, gnl|xenTro1|scaffold_22 (2316125-2316523) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 229-386, gnl|bosTau2|chr10 (69309841-69309684) | |
| 229-386, gnl|canFam2|chr8 (64442345-64442523) | |
| 229-386, gnl|danRer3|chr17 (32053103-32052950) | |
| 229-386, gnl|dasNov1|scaffold_43485 (248-426) | |
| 229-386, gnl|echTel1|scaffold_282638 (14756-14608) | |
| 229-386, gnl|fr1|chrUn (137217825-137217993) | |
| 229-386, gnl|galGal2|chr5 (40675653-40675818) | |
| 229-386, gnl|hg17|chr14 (89937321-89937499) | |
| 229-386, gnl|Hg17|chr14 (89937350-89937507) | |
| 229-386, gnl|loxAfr1|scaffold_8914 (23129-22989) | |
| 229-386, gnl|mm7|chr12 (97698900-97699070) | |
| 229-386, gnl|Mm7|chr12 (97698921-97699078) | |
| 229-386, gnl|monDom2|scaffold_8 (35059950-35059768) | |
| 229-386, gnl|oryCun1|scaffold_191855 (47718-47539) | |
| 229-386, gnl|panTro1|chr15 (90203430-90203608) | |
| 229-386, gnl|rheMac2|chr7 (153612831-153613009) | |
| 229-386, gnl|rn3|chr6 (124485668-124485846) | |
| 229-386, gnl|tetNig1|chr14 (8622867-8623012) | |
| 229-386, gnl|xenTro1|scaffold_22 (2312074-2312256) | |
| 620-1154, gnl|bosTau2|chr10 (69306776-69306251) | |
| 620-1154, gnl|Hg17|chr14 (89940784-89941302) | |
| 620-1154, gnl|Mm7|chr12 (97701750-97702274) | |
| 1286-1533, gnl|bosTau2|chr10 (69306150-69305904) | |
| 1286-1533, gnl|canFam2|chr1 (37990418-37990848) | |
| 1286-1533, gnl|dasNov1|scaffold_2363 (44264-43851) | |
| 1286-1533, gnl|echTel1|scaffold_162327 (4347-3916) | |
| 1286-1533, gnl|galGal2|chr5 (40680075-40680494) | |
| 1286-1533, gnl|hg17|chr10 (71102129-71102579) | |
| 1286-1533, gnl|Hg17|chr14 (89941433-89941682) | |
| 1286-1533, gnl|loxAfr1|scaffold_3280 (42276-41852) | |
| 1286-1533, gnl|mm7|chr12 (97702219-97702633) | |
| 1286-1533, gnl|Mm7|chr12 (97702396-97702641) | |
| 1286-1533, gnl|monDom2|scaffold_8 (35055336-35054895) | |
| 1286-1533, gnl|oryCun1|scaffold_198333 (101960-101536) | |
| 1286-1533, gnl|panTro1|chr8 (72262588-72263038) | |
| 1286-1533, gnl|rheMac2|chr9 (67338593-67338145) | |
| 1286-1533, gnl|rn3|chr6 (124488975-124489385) | |
| 1286-1533, gnl|xenTro1|scaffold_22 (2316125-2316523) |
| Expressed library(ies): 78 entry(ies) | More info |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
| cje (3.30469) | |
| fco (3.14416) | |
| cmu (2.7959) | |
| ldo (2.61907) | |
| cte (2.34192) | |
| sto (2.15789) | |
| lyg (2.12964) | |
| ste (2.02812) | |
| pgl (1.65877) | |
| sug (1.65479) | |
| che (1.63577) | |
| pro (1.5361) | |
| sme (1.52718) | |
| spc (1.47376) | |
| cbe (1.43541) | |
| ova (1.42045) | |
| cst (1.40036) | |
| aor (1.36692) | |
| tra (1.35401) | |
| bfe (1.34872) | |
| vin (1.33023) | |
| ebs (1.30131) | |
| gul (1.24312) | |
| sin (1.22463) | |
| cut (1.18946) | |
| elu (1.15607) | |
| bla (1.11912) | |
| sag (1.09629) | |
| rec (1.03842) | |
| eye (1.02302) | |
| csk (0.985222) | |
| isp (0.902256) | |
| amn (0.835422) | |
| cki (0.826173) | |
| nco (0.808669) | |
| jej (0.791374) | |
| fcc (0.791139) | |
| ret (0.7724) | |
| fbs (0.701385) | |
| ssp (0.677599) | |
| thg (0.633955) | |
| tes (0.623441) | |
| tbr (0.616713) | |
| pty (0.570858) | |
| jca (0.569801) | |
| eep (0.490256) | |
| ece (0.45861) | |
| fat (0.442282) | |
| liv (0.438853) | |
| nms (0.427716) | |
| nca (0.410621) | |
| eje (0.395335) | |
| mgm (0.360685) | |
| eru (0.360144) | |
| ill (0.351185) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| mga (0.32041) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| kid (0.259471) | |
| ese (0.253004) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (3.30469) | |
| fco (3.14416) | |
| cmu (2.7959) | |
| ldo (2.61907) | |
| cte (2.34192) | |
| sto (2.15789) | |
| lyg (2.12964) | |
| ste (2.02812) | |
| pgl (1.65877) | |
| sug (1.65479) | |
| che (1.63577) | |
| pro (1.5361) | |
| sme (1.52718) | |
| spc (1.47376) | |
| cbe (1.43541) | |
| ova (1.42045) | |
| cst (1.40036) | |
| aor (1.36692) | |
| tra (1.35401) | |
| bfe (1.34872) | |
| vin (1.33023) | |
| ebs (1.30131) | |
| gul (1.24312) | |
| sin (1.22463) | |
| cut (1.18946) | |
| elu (1.15607) | |
| bla (1.11912) | |
| sag (1.09629) | |
| rec (1.03842) | |
| eye (1.02302) | |
| csk (0.985222) | |
| isp (0.902256) | |
| amn (0.835422) | |
| cki (0.826173) | |
| nco (0.808669) | |
| jej (0.791374) | |
| fcc (0.791139) | |
| ret (0.7724) | |
| fbs (0.701385) | |
| ssp (0.677599) | |
| thg (0.633955) | |
| tes (0.623441) | |
| tbr (0.616713) | |
| pty (0.570858) | |
| jca (0.569801) | |
| eep (0.490256) | |
| ece (0.45861) | |
| fat (0.442282) | |
| liv (0.438853) | |
| nms (0.427716) | |
| nca (0.410621) | |
| eje (0.395335) | |
| mgm (0.360685) | |
| eru (0.360144) | |
| ill (0.351185) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| mga (0.32041) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| kid (0.259471) | |
| ese (0.253004) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cty (0.10408) | |
| nbm (0.0993246) |