Ss1.1-rebs23c_p20.5
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CAGTTTTAACCAGCTGAAATGTCTGCCTTTGAAAGCAGCAAACATGATTTGTATGTTAAC
TTAACTTTAATTTCCTGTGTGGTTTATATCCAAAGCAGACACCCATAAAGTATGAAGGAA
AAACTTTTTAACCGTTATTAAAAAGAGAACTTGCCAAGTTGAATGGCATTGTTTTGAACT
TATTCTAAAGGGTTAAAACTAGCCCATTTAGGCAAACATCAGAGAATACAATATTCACAA
AAGATGCATTTCAACTTTTAAATTGCAAGTGATTGTATAAGGAATGCCACCCTAAATCTT
CTATCTTATTTTTCCTCATGGAAAAATTAACGGTGAATGAAACGGGTGTGCAAGATACAT
ACTGTATTTTTAAAATAGTATTGCAACTAAATGGAAATATGTTAAGCATACATCCATAGT
AAAATGAATAGTCTACAGTGGTATCTTTTCATAAAATTTCCTCTTAAGATTCCTTTTGCT
TCTTCTTTTGAATTCTCTAAAATAGGCAGCTAACGGGTTGTATACTTCAGGGTTTGGCTT
TGTGCTTGCTATATGTGGTTTAGCATTTTGCTGTATTTCAAAAATTTCCTTCGGTTAAAG
GAAAATATTGTGGATAACCACTAGTGTGTTCTTAGATCAGCACAAACCATGTCAAAGAAA
ATTGGAATTTTTTTCCAAGTTTCTTTGCACTAATTTCATGCAGTCATAAACAATGGCATT
TGTTACCTTTGGCTTTTGCTCTCAGATTGTTATCCCACAGTTTCACTGTCCTAATTGTCT
CTTCTTATGTGTACGCTTTTGTTTTATTTTACTTCTAAGTTATTTCTAATAGAACCCTGC
TGCCCCTGGAATTTCAGCCGTCATGTTGGAGAATATTTTCAGTTTACTGCAGTGCTGTGT
CCTATGATTAGTATTAACCCCATTTCCCAAAGGGTTTACATTCTGCTAAAAAGAGACGCC
CATGTAAAATGT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CAGTTTTAACCAGCTGAAATGTCTGCCTTTGAAAGCAGCAAACATGATTTGTATGTTAAC
TTAACTTTAATTTCCTGTGTGGTTTATATCCAAAGCAGACACCCATAAAGTATGAAGGAA
AAACTTTTTAACCGTTATTAAAAAGAGAACTTGCCAAGTTGAATGGCATTGTTTTGAACT
TATTCTAAAGGGTTAAAACTAGCCCATTTAGGCAAACATCAGAGAATACAATATTCACAA
AAGATGCATTTCAACTTTTAAATTGCAAGTGATTGTATAAGGAATGCCACCCTAAATCTT
CTATCTTATTTTTCCTCATGGAAAAATTAACGGTGAATGAAACGGGTGTGCAAGATACAT
ACTGTATTTTTAAAATAGTATTGCAACTAAATGGAAATATGTTAAGCATACATCCATAGT
AAAATGAATAGTCTACAGTGGTATCTTTTCATAAAATTTCCTCTTAAGATTCCTTTTGCT
TCTTCTTTTGAATTCTCTAAAATAGGCAGCTAACGGGTTGTATACTTCAGGGTTTGGCTT
TGTGCTTGCTATATGTGGTTTAGCATTTTGCTGTATTTCAAAAATTTCCTTCGGTTAAAG
GAAAATATTGTGGATAACCACTAGTGTGTTCTTAGATCAGCACAAACCATGTCAAAGAAA
ATTGGAATTTTTTTCCAAGTTTCTTTGCACTAATTTCATGCAGTCATAAACAATGGCATT
TGTTACCTTTGGCTTTTGCTCTCAGATTGTTATCCCACAGTTTCACTGTCCTAATTGTCT
CTTCTTATGTGTACGCTTTTGTTTTATTTTACTTCTAAGTTATTTCTAATAGAACCCTGC
TGCCCCTGGAATTTCAGCCGTCATGTTGGAGAATATTTTCAGTTTACTGCAGTGCTGTGT
CCTATGATTAGTATTAACCCCATTTCCCAAAGGGTTTACATTCTGCTAAAAAGAGACGCC
CATGTAAAATGT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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641-783, - strand, RNAmicro p=0.999614 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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641-783, - strand, RNAmicro p=0.999614 |
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521-666, DA124876 BRACE3 Homo sapiens cDNA clone BRACE3047402 5', mRNA
(dbj|DA124876.1|), blast E-value=9.94922e-44, identity=91.1% |
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521-666, DA289916 BRHIP2 Homo sapiens cDNA clone BRHIP2001118 5', mRNA
(dbj|DA289916.1|), blast E-value=9.94922e-44, identity=91.1% |
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521-666, DA529634 FEBRA2 Homo sapiens cDNA clone FEBRA2022382 5', mRNA
(dbj|DA529634.1|), blast E-value=6.00036e-42, identity=90.41% |
|
521-666, DB491546 RIKEN full-length enriched human cDNA library,
(dbj|DB491546.1|), blast E-value=1.99993e-41, identity=90.41% |
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521-666, DKFZp686B19269_r1 686 (synonym (emb|BX488247.1|), blast
E-value=9.94922e-44, identity=91.1% |
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521-666, DKFZp459D1831_r1 459 (synonym (emb|CR556157.1|), blast
E-value=1.99993e-41, identity=90.41% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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521-666, DA124876 BRACE3 Homo sapiens cDNA clone BRACE3047402 5', mRNA
(dbj|DA124876.1|), blast E-value=9.94922e-44, identity=91.1% |
|
521-666, DA289916 BRHIP2 Homo sapiens cDNA clone BRHIP2001118 5', mRNA
(dbj|DA289916.1|), blast E-value=9.94922e-44, identity=91.1% |
|
521-666, DA529634 FEBRA2 Homo sapiens cDNA clone FEBRA2022382 5', mRNA
(dbj|DA529634.1|), blast E-value=6.00036e-42, identity=90.41% |
|
521-666, DB491546 RIKEN full-length enriched human cDNA library,
(dbj|DB491546.1|), blast E-value=1.99993e-41, identity=90.41% |
|
521-666, DKFZp686B19269_r1 686 (synonym (emb|BX488247.1|), blast
E-value=9.94922e-44, identity=91.1% |
|
521-666, DKFZp459D1831_r1 459 (synonym (emb|CR556157.1|), blast
E-value=1.99993e-41, identity=90.41% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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fco (0.157208) |
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kid (0.129735) |
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ebs (0.118301) |
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fco (0.157208) |
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kid (0.129735) |
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ebs (0.118301) |