Non-Coding RNA Search

Ss1.1-rebs24c_i24.5

Sequence:


               
               CCCGGCCCCCGCGCGCCTCCCGGACTGGAGCTGAGATCCCGGCGCGCCCAGGTTCCTTCT
CAGAGCCAGCTGGAGTCTGTGCTTGGCTGCTTAGGGGAGTGGGGGGCACAGCTTAGAAGG
AGCCGGAGGAATCCACAGGCAGAGCTCCAGATCTGACCAGCACAGACATGCCGGTGCTGT
CTGAGGACTCCGGCTTGCATGAAACCCTGGCGCTGCTGACCTCTCAGCTCAGACCTGACT
CCAACCACAAGGAAGAGATGGGCTTCCTGAGGGATGTTTTCAGTGAAAAAAGCCTCAGTT
ATTTAATGAAGATTCACGAGAAGCTTCGCTATTACGAGAGGCAAAGTCCAACCCCTGTTC
TGCACAGCGCCGTGGCCCTGGCGGAGGATGTGATGGAGGAGCTGCAGGCCGCCTCCGTGC
ACAGCGACGAGAGGGAGCTGCTCCAGCTGCTGTCCACCCCCCACCTCAGGGCCATGCTCA
TGGTACACGACACTGTCGCCCAGAAGAATTTCGACCCCGTTCTGCCCCCTCTGCCCGATC
ACATTGCTGAGGATTTTGACGAAGAATCAGTGAAGATTGTCCGTCTGGTGAAAAACAAGG
AACCTCTGGGGGCCACCATCCGGCGGGACGAGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCCCCCGCGCGCCTCCCGGACTGGAGCTGAGATCCCGGCGCGCCCAGGTTCCTTCT
CAGAGCCAGCTGGAGTCTGTGCTTGGCTGCTTAGGGGAGTGGGGGGCACAGCTTAGAAGG
AGCCGGAGGAATCCACAGGCAGAGCTCCAGATCTGACCAGCACAGACATGCCGGTGCTGT
CTGAGGACTCCGGCTTGCATGAAACCCTGGCGCTGCTGACCTCTCAGCTCAGACCTGACT
CCAACCACAAGGAAGAGATGGGCTTCCTGAGGGATGTTTTCAGTGAAAAAAGCCTCAGTT
ATTTAATGAAGATTCACGAGAAGCTTCGCTATTACGAGAGGCAAAGTCCAACCCCTGTTC
TGCACAGCGCCGTGGCCCTGGCGGAGGATGTGATGGAGGAGCTGCAGGCCGCCTCCGTGC
ACAGCGACGAGAGGGAGCTGCTCCAGCTGCTGTCCACCCCCCACCTCAGGGCCATGCTCA
TGGTACACGACACTGTCGCCCAGAAGAATTTCGACCCCGTTCTGCCCCCTCTGCCCGATC
ACATTGCTGAGGATTTTGACGAAGAATCAGTGAAGATTGTCCGTCTGGTGAAAAACAAGG
AACCTCTGGGGGCCACCATCCGGCGGGACGAGCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860864|ref|XP_602114.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860864|ref|XP_602114.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-311, - strand, RNAz p=0.933971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-311, - strand, RNAz p=0.933971

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               188-311, gnl|bosTau2|chr19 (38404442-38404565)
               

               
               188-311, gnl|canFam2|chr9 (22797351-22797227)
               

               
               188-311, gnl|danRer3|chr3 (35274970-35274846)
               

               
               188-311, gnl|echTel1|scaffold_215943 (415-539)
               

               
               188-311, gnl|fr1|chrUn (279301305-279301429)
               

               
               188-311, gnl|galGal2|chrUn (45705001-45704878)
               

               
               188-311, gnl|hg17|chr17 (39264451-39264575)
               

               
               188-311, gnl|Hg17|chr17 (39264576-39264453)
               

               
               188-311, gnl|loxAfr1|scaffold_2421 (85009-84885)
               

               
               188-311, gnl|mm7|chr11 (102134418-102134542)
               

               
               188-311, gnl|Mm7|chr11 (102134543-102134420)
               

               
               188-311, gnl|monDom2|scaffold_18 (54349087-54349211)
               

               
               188-311, gnl|oryCun1|scaffold_139225 (20245-20369)
               

               
               188-311, gnl|panTro1|chr19 (42449771-42449895)
               

               
               188-311, gnl|rheMac2|chr16 (53859377-53859501)
               

               
               188-311, gnl|rn3|chr10 (91099394-91099518)
               

               
               188-311, gnl|tetNig1|chr2 (5662916-5663039)
               


               
               470-609, gnl|bosTau2|chr19 (38406339-38406478)
               

               
               470-609, gnl|Hg17|chr17 (39262686-39262547)
               

               
               470-609, gnl|Mm7|chr11 (102132504-102132365)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-311, gnl|bosTau2|chr19 (38404442-38404565)
               

               
               188-311, gnl|canFam2|chr9 (22797351-22797227)
               

               
               188-311, gnl|danRer3|chr3 (35274970-35274846)
               

               
               188-311, gnl|echTel1|scaffold_215943 (415-539)
               

               
               188-311, gnl|fr1|chrUn (279301305-279301429)
               

               
               188-311, gnl|galGal2|chrUn (45705001-45704878)
               

               
               188-311, gnl|hg17|chr17 (39264451-39264575)
               

               
               188-311, gnl|Hg17|chr17 (39264576-39264453)
               

               
               188-311, gnl|loxAfr1|scaffold_2421 (85009-84885)
               

               
               188-311, gnl|mm7|chr11 (102134418-102134542)
               

               
               188-311, gnl|Mm7|chr11 (102134543-102134420)
               

               
               188-311, gnl|monDom2|scaffold_18 (54349087-54349211)
               

               
               188-311, gnl|oryCun1|scaffold_139225 (20245-20369)
               

               
               188-311, gnl|panTro1|chr19 (42449771-42449895)
               

               
               188-311, gnl|rheMac2|chr16 (53859377-53859501)
               

               
               188-311, gnl|rn3|chr10 (91099394-91099518)
               

               
               188-311, gnl|tetNig1|chr2 (5662916-5663039)
               


               
               470-609, gnl|bosTau2|chr19 (38406339-38406478)
               

               
               470-609, gnl|Hg17|chr17 (39262686-39262547)
               

               
               470-609, gnl|Mm7|chr11 (102132504-102132365)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	188-311, gnl\|bosTau2\|chr19 (38404442-38404565)
	188-311, gnl\|canFam2\|chr9 (22797351-22797227)
	188-311, gnl\|danRer3\|chr3 (35274970-35274846)
	188-311, gnl\|echTel1\|scaffold_215943 (415-539)
	188-311, gnl\|fr1\|chrUn (279301305-279301429)
	188-311, gnl\|galGal2\|chrUn (45705001-45704878)
	188-311, gnl\|hg17\|chr17 (39264451-39264575)
	188-311, gnl\|Hg17\|chr17 (39264576-39264453)
	188-311, gnl\|loxAfr1\|scaffold_2421 (85009-84885)
	188-311, gnl\|mm7\|chr11 (102134418-102134542)
	188-311, gnl\|Mm7\|chr11 (102134543-102134420)
	188-311, gnl\|monDom2\|scaffold_18 (54349087-54349211)
	188-311, gnl\|oryCun1\|scaffold_139225 (20245-20369)
	188-311, gnl\|panTro1\|chr19 (42449771-42449895)
	188-311, gnl\|rheMac2\|chr16 (53859377-53859501)
	188-311, gnl\|rn3\|chr10 (91099394-91099518)
	188-311, gnl\|tetNig1\|chr2 (5662916-5663039)

	470-609, gnl\|bosTau2\|chr19 (38406339-38406478)
	470-609, gnl\|Hg17\|chr17 (39262686-39262547)
	470-609, gnl\|Mm7\|chr11 (102132504-102132365)