Non-Coding RNA Search

Ss1.1-rebs25c_b7.5

Sequence:


               
               AATCAACTGAAAGTGTCCTGAGTTAGAGCCATTTATAATTCCCATGGAAGCTAACCGTAG
CTCCACACATATGACTGCAGTTGTTCTGCATAGCCCTTTAATAAATCCATTTGATAATGA
TTTTTTGTGTAGAAGATCAGAAGCCTTGTGTTCTTACTGCCCTCAGGAAGCTCAAAGGAA
CACAAGCTGGTAAAAATCCTCTCCTAAACTCATCTAAATTCACATTAAGTGCTGAGTTGT
AACTTTCAAAGTGACCGACAATGGCCTTCTGCTTGATCTTCATTGTAGAGAAGGCTGGCG
GTGCGACTTACCGAATCACTTCTTTCTTTAATGAGAAATACAATTCAGCATCCTCATAAA
GGCTTTCACATGGTTTTAAACTTTAATAACTTGGATTATAGTCAGTGTAGGACAAAAATC
CAAGTAGCATCTTTTTTTACAGCATTAAATTCAGAATGACTATGGGAAACAAGCAATTTT
TTTTTGGCTGCACCCATGGCATGTGGAAATTCCCAGGCCAGGGATGGAACCCGTGCCACA
GTAGCATCCCAAGCTGCTGCAGTGACAGCACCAGATCTTTAACCCACTGCGCCACAAGGG
GGACTCCAGGACATCAACAGTTTGAATCTGGAAGACATATTTTTCATTTTCAAATTCACA
TATCCTTCAAGAGTCCATGTTGTAAATAGCATTTAAGAGCAAATGTATAACCTTCTTCAA
GTCATTTATGGATAGAGTCAAGGCACAATTACACAGTCTTTCTTTTTTTTTGGGCTGCAC
CTGCAGGGTGCC------------------------------------------------
------------------------CCGATTACATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAACTGAAAGTGTCCTGAGTTAGAGCCATTTATAATTCCCATGGAAGCTAACCGTAG
CTCCACACATATGACTGCAGTTGTTCTGCATAGCCCTTTAATAAATCCATTTGATAATGA
TTTTTTGTGTAGAAGATCAGAAGCCTTGTGTTCTTACTGCCCTCAGGAAGCTCAAAGGAA
CACAAGCTGGTAAAAATCCTCTCCTAAACTCATCTAAATTCACATTAAGTGCTGAGTTGT
AACTTTCAAAGTGACCGACAATGGCCTTCTGCTTGATCTTCATTGTAGAGAAGGCTGGCG
GTGCGACTTACCGAATCACTTCTTTCTTTAATGAGAAATACAATTCAGCATCCTCATAAA
GGCTTTCACATGGTTTTAAACTTTAATAACTTGGATTATAGTCAGTGTAGGACAAAAATC
CAAGTAGCATCTTTTTTTACAGCATTAAATTCAGAATGACTATGGGAAACAAGCAATTTT
TTTTTGGCTGCACCCATGGCATGTGGAAATTCCCAGGCCAGGGATGGAACCCGTGCCACA
GTAGCATCCCAAGCTGCTGCAGTGACAGCACCAGATCTTTAACCCACTGCGCCACAAGGG
GGACTCCAGGACATCAACAGTTTGAATCTGGAAGACATATTTTTCATTTTCAAATTCACA
TATCCTTCAAGAGTCCATGTTGTAAATAGCATTTAAGAGCAAATGTATAACCTTCTTCAA
GTCATTTATGGATAGAGTCAAGGCACAATTACACAGTCTTTCTTTTTTTTTGGGCTGCAC
CTGCAGGGTGCC------------------------------------------------
------------------------CCGATTACATAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-469, gnl|bosTau2|chr19 (12487957-12487499)
               

               
               1-469, gnl|Hg17|chr17 (27681723-27681198)
               

               
               1-469, gnl|Mm7|chr11 (80443852-80443396)
               


               
               608-761, gnl|bosTau2|chr19 (12487416-12487263)
               

               
               608-761, gnl|Hg17|chr17 (27680866-27680718)
               

               
               608-761, gnl|Mm7|chr11 (80443319-80442529)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-469, gnl|bosTau2|chr19 (12487957-12487499)
               

               
               1-469, gnl|Hg17|chr17 (27681723-27681198)
               

               
               1-469, gnl|Mm7|chr11 (80443852-80443396)
               


               
               608-761, gnl|bosTau2|chr19 (12487416-12487263)
               

               
               608-761, gnl|Hg17|chr17 (27680866-27680718)
               

               
               608-761, gnl|Mm7|chr11 (80443319-80442529)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-469, gnl\|bosTau2\|chr19 (12487957-12487499)
	1-469, gnl\|Hg17\|chr17 (27681723-27681198)
	1-469, gnl\|Mm7\|chr11 (80443852-80443396)

	608-761, gnl\|bosTau2\|chr19 (12487416-12487263)
	608-761, gnl\|Hg17\|chr17 (27680866-27680718)
	608-761, gnl\|Mm7\|chr11 (80443319-80442529)