Non-Coding RNA Search

Ss1.1-rebs25c_d20.5

Sequence:


               
               GGCAAGGCCTTCAGCTGGCACTCGCACCTGGTGACGCACCGGCGCACGCACACGGGCGAG
AAACCCTACGCCCACCAGCGCATCCACACGGGCGAGAAGCCCTACGTGTGCGACCGCTGC
GCCAAGCGCTTCACCCGCCGCTCGGACCTGGTCACCCACCAGGGCACCCACACGGGCGCC
AAGCCGCACAAGTGCCCCATCTGCGGCAAGTGCTTCACGCAGAGCTCGGCGCTGGTCACC
CACCAGCGCACCCACACTGGGGTCAAGCCCTACCCGTGCCCCGAGTGCGGCAAGTGCTTC
AGCCAGCGCTCCAACCTCATCGCGCACAACCGCACGCACACGGGCGAGAAGCCCTACCAC
TGTCTCGACTGCGGCAAGAGCTTCAGCCACAGCTCGCACCTCACCGCCCACCAGCGCACC
CACCGCGGCGTCCGGCCCTACTCGTGCCCCCTGTGTGGCAAGAGCTTCAGCCGGCGCTCC
AACCTGCACCGGCACGAGAAGATCCACACGGCGGGGCCCAAGGCCCTGGCCATGCTGATG
ACATCAAGATGGAGCCGGAGGAGCCGCAGCCCGTCAGCCCCCACCTAGGAGGCCAAGCAG
GAGGGGCCAGGCGGGGGGAGCGGGGGTGGCAGGAGGAGCCGGCAGCTGCTGAGGGGGTGT
GACCTGGCGCGGCCAGGGAGGGACTTGCTGGGGAAGTGCTGGCATGGGGTTTGGGGCGCG
GCGGCGCAGGAGGAGCTAGGGTGAGGAGCGGGCATGCTGGCCGAAAATTAAAGGCCTTGG
AATTCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGGCCTTCAGCTGGCACTCGCACCTGGTGACGCACCGGCGCACGCACACGGGCGAG
AAACCCTACGCCCACCAGCGCATCCACACGGGCGAGAAGCCCTACGTGTGCGACCGCTGC
GCCAAGCGCTTCACCCGCCGCTCGGACCTGGTCACCCACCAGGGCACCCACACGGGCGCC
AAGCCGCACAAGTGCCCCATCTGCGGCAAGTGCTTCACGCAGAGCTCGGCGCTGGTCACC
CACCAGCGCACCCACACTGGGGTCAAGCCCTACCCGTGCCCCGAGTGCGGCAAGTGCTTC
AGCCAGCGCTCCAACCTCATCGCGCACAACCGCACGCACACGGGCGAGAAGCCCTACCAC
TGTCTCGACTGCGGCAAGAGCTTCAGCCACAGCTCGCACCTCACCGCCCACCAGCGCACC
CACCGCGGCGTCCGGCCCTACTCGTGCCCCCTGTGTGGCAAGAGCTTCAGCCGGCGCTCC
AACCTGCACCGGCACGAGAAGATCCACACGGCGGGGCCCAAGGCCCTGGCCATGCTGATG
ACATCAAGATGGAGCCGGAGGAGCCGCAGCCCGTCAGCCCCCACCTAGGAGGCCAAGCAG
GAGGGGCCAGGCGGGGGGAGCGGGGGTGGCAGGAGGAGCCGGCAGCTGCTGAGGGGGTGT
GACCTGGCGCGGCCAGGGAGGGACTTGCTGGGGAAGTGCTGGCATGGGGTTTGGGGCGCG
GCGGCGCAGGAGGAGCTAGGGTGAGGAGCGGGCATGCTGGCCGAAAATTAAAGGCCTTGG
AATTCAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-390, - strand, RNAz p=0.852687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-390, - strand, RNAz p=0.852687

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               262-378, - strand, RNAmicro p=0.916362

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               262-378, - strand, RNAmicro p=0.916362

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               71-430, gnl|bosTau2|chr25 (3664244-3664602)
               

               
               71-430, gnl|Hg17|chr16 (3109888-3110246)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-430, gnl|bosTau2|chr25 (3664244-3664602)
               

               
               71-430, gnl|Hg17|chr16 (3109888-3110246)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	71-430, gnl\|bosTau2\|chr25 (3664244-3664602)
	71-430, gnl\|Hg17\|chr16 (3109888-3110246)