Non-Coding RNA Search

Ss1.1-rebs25c_h10.5

Sequence:


               
               CTGGTCTCTCCACTCCGAGGGCCAGACCCGAAGCTACTGCTGAGCCAGAGCTGGAAGAGA
TCCTCCTTTCTCTTCCTCCCCTCACTGATCTTGGCCCAACCCAGTCCCTCGTTTGGTATT
TTCTTGAGCTCCTGACCCCTACCCCAGGTTTCTAACTTTGTAACTTGCCTCTGATGTGGG
TCCCTAAACTGATATCATAGCTCCCCTACTCTGGGCTGAGGGGCACGCCCATTCCCCCAC
CATCGTCCATCCTGGGGGCTCTCGCACAAATCTGAGGGCTAGGCTAACTCCCTGTCCTCC
CTCTCCCTCCAGGAGCCCCCAGCATGTCCTGACCTTGTGCACAGGGGTGGGGGGACAGCT
CCTGCCCATCTTCCCCCACCCCACCCCCGCCACATACCCCACTAAACCATCTGACGAAAT
TAACGAATAAAAATGATGAAAATGTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCTCTCCACTCCGAGGGCCAGACCCGAAGCTACTGCTGAGCCAGAGCTGGAAGAGA
TCCTCCTTTCTCTTCCTCCCCTCACTGATCTTGGCCCAACCCAGTCCCTCGTTTGGTATT
TTCTTGAGCTCCTGACCCCTACCCCAGGTTTCTAACTTTGTAACTTGCCTCTGATGTGGG
TCCCTAAACTGATATCATAGCTCCCCTACTCTGGGCTGAGGGGCACGCCCATTCCCCCAC
CATCGTCCATCCTGGGGGCTCTCGCACAAATCTGAGGGCTAGGCTAACTCCCTGTCCTCC
CTCTCCCTCCAGGAGCCCCCAGCATGTCCTGACCTTGTGCACAGGGGTGGGGGGACAGCT
CCTGCCCATCTTCCCCCACCCCACCCCCGCCACATACCCCACTAAACCATCTGACGAAAT
TAACGAATAAAAATGATGAAAATGTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               197-426, - strand, RNAz p=0.989426

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-426, - strand, RNAz p=0.989426

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               251-337, + strand, RNAmicro p=0.999695
               

               
               233-368, - strand, RNAmicro p=0.99668

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               251-337, + strand, RNAmicro p=0.999695
               

               
               233-368, - strand, RNAmicro p=0.99668

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-445, gnl|bosTau2|chr18 (36935750-36936180)
               

               
               1-445, gnl|Hg17|chr19 (40971129-40971563)
               

               
               1-445, gnl|Mm7|chr7 (27463853-27463450)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr18 (36935750-36936180)
               

               
               1-445, gnl|Hg17|chr19 (40971129-40971563)
               

               
               1-445, gnl|Mm7|chr7 (27463853-27463450)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

	251-337, + strand, RNAmicro p=0.999695
	233-368, - strand, RNAmicro p=0.99668

	1-445, gnl\|bosTau2\|chr18 (36935750-36936180)
	1-445, gnl\|Hg17\|chr19 (40971129-40971563)
	1-445, gnl\|Mm7\|chr7 (27463853-27463450)