Non-Coding RNA Search

Ss1.1-rebs25c_k19.5

Sequence:


               
               ATGTTCAGATTCCACCCCTTCATCCCTCTTTCCCAGTAACTAGTCCAGCCCCATGTTTGA
GAATAGAATCACCTCCAACCTACAACTCATTAGAGTTTGTTGCATTAACAGTTGAATCTC
CTCATGAAAATTCTATGTGCAATGTCAGGACATCTAAGCTAGCCAAGTTCCAGATTGGAA
TCATTGCTGGTTTCCATTTCTGCTCTCTGCAATTCAGTTGCTTACCTGCAAGCAGAAATC
CTTTCCCCTTACTCCCTCATTCTGGGTGGCTAAGATCATCTTTGCCTTGTCTACTTTCCC
TACCTACACACTAAGACATCTTAGCCCACTGATCTTAACTAGGGTCTGCCATCCTTGGAC
ATTTTCTGCAAAAGCAGAAATCCTACCCACTTATATCCCTACCCATTTCTAGATCTCCTT
CCCTTTTGTCCTTTATTCCTAGAGTCCAAATTGTGTATGTTGTCCTGGTTTAGGACAGCT
GACAGCTTTACACCAAAGCTGAAGCATCTTGTTTAATCCTATGCAAGGGGGCTAGAAGGG
CACTAAAATCCCCTTCTGATATTGAGGGATAGAGGTTACCAGGAGGGCGAAGGTCTCTAA
CAGTCCTGCTTACCTTTCAGAATATAAATTATTGTGAGGCCTAAGAAGCTCCCTTTTGTG
ACTTAGTGTATGTGCATAGACATATCAGTTCAAATAAATGTACCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTCAGATTCCACCCCTTCATCCCTCTTTCCCAGTAACTAGTCCAGCCCCATGTTTGA
GAATAGAATCACCTCCAACCTACAACTCATTAGAGTTTGTTGCATTAACAGTTGAATCTC
CTCATGAAAATTCTATGTGCAATGTCAGGACATCTAAGCTAGCCAAGTTCCAGATTGGAA
TCATTGCTGGTTTCCATTTCTGCTCTCTGCAATTCAGTTGCTTACCTGCAAGCAGAAATC
CTTTCCCCTTACTCCCTCATTCTGGGTGGCTAAGATCATCTTTGCCTTGTCTACTTTCCC
TACCTACACACTAAGACATCTTAGCCCACTGATCTTAACTAGGGTCTGCCATCCTTGGAC
ATTTTCTGCAAAAGCAGAAATCCTACCCACTTATATCCCTACCCATTTCTAGATCTCCTT
CCCTTTTGTCCTTTATTCCTAGAGTCCAAATTGTGTATGTTGTCCTGGTTTAGGACAGCT
GACAGCTTTACACCAAAGCTGAAGCATCTTGTTTAATCCTATGCAAGGGGGCTAGAAGGG
CACTAAAATCCCCTTCTGATATTGAGGGATAGAGGTTACCAGGAGGGCGAAGGTCTCTAA
CAGTCCTGCTTACCTTTCAGAATATAAATTATTGTGAGGCCTAAGAAGCTCCCTTTTGTG
ACTTAGTGTATGTGCATAGACATATCAGTTCAAATAAATGTACCCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-621, + strand, RNAz p=0.984763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-621, + strand, RNAz p=0.984763

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-704, gnl|bosTau2|chr8 (48647127-48646422)
               

               
               1-704, gnl|Hg17|chr9 (101315730-101315020)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-704, gnl|bosTau2|chr8 (48647127-48646422)
               

               
               1-704, gnl|Hg17|chr9 (101315730-101315020)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               eye (0.170503)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-704, gnl\|bosTau2\|chr8 (48647127-48646422)
	1-704, gnl\|Hg17\|chr9 (101315730-101315020)

	ece (0.229305)
	eye (0.170503)
	sug (0.127291)
	eru (0.120048)
	ebs (0.118301)