Non-Coding RNA Search

Ss1.1-rebs25c_n2.5

Sequence:


               
               TTTTTCATCCACGGCGTCGGTGGGTCCCTGGCTATTTGGAAGGAACAGCTGGACTTCTTT
GTGCGCCTGGGCTACGAGGTAGTAGCGCCCGACCTGGCCGGTCATGGGGCCAGCTCAGCA
CCCCAAGTGGCCGCCGCCTACACTTTCTATGCGCTGGCAGAGGACATGCGTGCCATCTTC
AAGCGCTATGCCAAGAAACGAAATGTGCTCATTGGGCATTCCTATGGAGTCTCCTTCTGC
ACGTTCCTGGCGCACGAGTACCCAGACCTGGTGCACAAAGTGATCATGATCAACGGTGGG
GGCCCCACAGCACTGGAGCCCAGCTTCTGCTCCATCTTCAACATGCCCACGTGTGTCCTG
CACTGCCTGTCACCCTGCCTGGCTTGGAGCTTCCTCAAGGCCGGCTTTGCTCGCCAAGGG
GCCAAAGAAAAGCAGCTGCTGAAGGAGGGTAACGCGTTCAACGTGTCTTCCTTTGTGCTT
CGGGCCATGATGAGTGGCCAGTACTGGCCTGAGGGCGACGAGGTCTACCACGCCGAGCTC
ACTGTGCCCGTCCTGCTCGTCCATGGCATGCACGACAAATTTGTGCCGGTGGAGGAAGAC
CAGCGCATGGCCGAGATCCTGCTCCTGGCCTTCCTAAAGCTCATAGACGAAGGCAGCCAC
ATGGTGATGCTGGAGTGTCCAGAGACGGTCAACACACTCCTCCACGAATTCCTGCTCTGG
GAGCCGGAGCCCTCGCCCAAGGCCCTGCCTGAGCCCCTGCCCGCGCCCCTGGAGGAAAAG
AAGTAGCCGCTGAGCTGGCTGGGTATCGCTTAGTGAGCCTTAGTGAGCCGAGGAGCAGGA
GGAGGAGGCCAGAGCCGGCATCAGGTCTGCAGCGCAGACCGCCTGGGGTGCCATTCGCTC
CAGTAGGCAGGGTCAGGTTACGGAGATGCTCCCAGGCCGGCTGGGCAGGACGTGGCATTC
GTGGGAGCCAGGTGGTGGACACACTGCTCTCTGCTAGTCCTGCAGGGCCCATCGCTGTTT
CCGGGCCATAGCCAGGACCCCTGCAGAGGATGACCTTGTATAGAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCATCCACGGCGTCGGTGGGTCCCTGGCTATTTGGAAGGAACAGCTGGACTTCTTT
GTGCGCCTGGGCTACGAGGTAGTAGCGCCCGACCTGGCCGGTCATGGGGCCAGCTCAGCA
CCCCAAGTGGCCGCCGCCTACACTTTCTATGCGCTGGCAGAGGACATGCGTGCCATCTTC
AAGCGCTATGCCAAGAAACGAAATGTGCTCATTGGGCATTCCTATGGAGTCTCCTTCTGC
ACGTTCCTGGCGCACGAGTACCCAGACCTGGTGCACAAAGTGATCATGATCAACGGTGGG
GGCCCCACAGCACTGGAGCCCAGCTTCTGCTCCATCTTCAACATGCCCACGTGTGTCCTG
CACTGCCTGTCACCCTGCCTGGCTTGGAGCTTCCTCAAGGCCGGCTTTGCTCGCCAAGGG
GCCAAAGAAAAGCAGCTGCTGAAGGAGGGTAACGCGTTCAACGTGTCTTCCTTTGTGCTT
CGGGCCATGATGAGTGGCCAGTACTGGCCTGAGGGCGACGAGGTCTACCACGCCGAGCTC
ACTGTGCCCGTCCTGCTCGTCCATGGCATGCACGACAAATTTGTGCCGGTGGAGGAAGAC
CAGCGCATGGCCGAGATCCTGCTCCTGGCCTTCCTAAAGCTCATAGACGAAGGCAGCCAC
ATGGTGATGCTGGAGTGTCCAGAGACGGTCAACACACTCCTCCACGAATTCCTGCTCTGG
GAGCCGGAGCCCTCGCCCAAGGCCCTGCCTGAGCCCCTGCCCGCGCCCCTGGAGGAAAAG
AAGTAGCCGCTGAGCTGGCTGGGTATCGCTTAGTGAGCCTTAGTGAGCCGAGGAGCAGGA
GGAGGAGGCCAGAGCCGGCATCAGGTCTGCAGCGCAGACCGCCTGGGGTGCCATTCGCTC
CAGTAGGCAGGGTCAGGTTACGGAGATGCTCCCAGGCCGGCTGGGCAGGACGTGGCATTC
GTGGGAGCCAGGTGGTGGACACACTGCTCTCTGCTAGTCCTGCAGGGCCCATCGCTGTTT
CCGGGCCATAGCCAGGACCCCTGCAGAGGATGACCTTGTATAGAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882903|ref|XP_614371.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882903|ref|XP_614371.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.517873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.517873

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-227, gnl|bosTau2|chr7 (2795206-2795432)
               

               
               1-227, gnl|Hg17|chr19 (17272891-17272665)
               

               
               1-227, gnl|Mm7|chr8 (69928557-69928331)
               


               
               229-399, gnl|bosTau2|chr7 (2797609-2797779)
               

               
               229-399, gnl|Hg17|chr19 (17266653-17266483)
               

               
               229-399, gnl|Mm7|chr8 (69925632-69925462)
               


               
               614-1068, gnl|bosTau2|chr7 (2799631-2800077)
               

               
               614-1068, gnl|Hg17|chr19 (17264642-17264198)
               

               
               614-1068, gnl|Mm7|chr8 (69924464-69924063)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr7 (2795206-2795432)
               

               
               1-227, gnl|Hg17|chr19 (17272891-17272665)
               

               
               1-227, gnl|Mm7|chr8 (69928557-69928331)
               


               
               229-399, gnl|bosTau2|chr7 (2797609-2797779)
               

               
               229-399, gnl|Hg17|chr19 (17266653-17266483)
               

               
               229-399, gnl|Mm7|chr8 (69925632-69925462)
               


               
               614-1068, gnl|bosTau2|chr7 (2799631-2800077)
               

               
               614-1068, gnl|Hg17|chr19 (17264642-17264198)
               

               
               614-1068, gnl|Mm7|chr8 (69924464-69924063)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

	1-227, gnl\|bosTau2\|chr7 (2795206-2795432)
	1-227, gnl\|Hg17\|chr19 (17272891-17272665)
	1-227, gnl\|Mm7\|chr8 (69928557-69928331)

	229-399, gnl\|bosTau2\|chr7 (2797609-2797779)
	229-399, gnl\|Hg17\|chr19 (17266653-17266483)
	229-399, gnl\|Mm7\|chr8 (69925632-69925462)

	614-1068, gnl\|bosTau2\|chr7 (2799631-2800077)
	614-1068, gnl\|Hg17\|chr19 (17264642-17264198)
	614-1068, gnl\|Mm7\|chr8 (69924464-69924063)