Ss1.1-rebs25c_n20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTTCTTAAGAACCTGAAGCTAATGAGCAGTGATTCTGCAACGTATCCTGACACTGAG TCTGACATACATTCATGGGAATCATTTCTTTCTGAGGTTAGAAAAGAAATTGAGAAAGCA GAGTCTCAGTTCGAAGAACAAATTCAAGCGATTAAAAATGGTTCTCGGCTCAGTGACCTT TCTAAAGTGCAGATTTCTGAGCTTTCATTTCCTGCTTGTAACACAGTTCTGCCTGCGTTA CTTCCTGAGCTGCCAGGCCATCATGATCAAGATCCCTCCACTTCTACAAGTCATGAGACC GGAGACCCGACAGCAGTTCTCGAGGATTCGAGTCTGCTCCCTGCCACCGATGGCCTGGAG GAGTCTCCCTCCTGCGAGCTGGAAGTCGCCCCTCTGCCCGAGCCTCAGAGCCCTGGCCAG GCGGCTGAGTCAGAGCCAAGCCTTGCCGCTGATCAGAAGTCACCCGTTGCTGTGGGACGT GCCACCCGTTCAAGCCAGTCTCCAAAAAAGCCGTTCAATAGTATCATCGAGCACCTGTCA GTGGTGTTCCCATGTTACAACAGCACCGAACTTGCTGGTTTTATTAAAAAAGTGAGAAAC AAAAACAAGAACTCGCTCTCTGGATTGAGTATTGACGAAATTGTCCAAAGAGTGACAGAA CACATTCTAGATGAAGAGAAGAAGAAAAAGCCAAATCCAGGAAAGGACCAGAGGCCCCCA GAGCCCAGCTGTGCCGCTTCTGTGACCGGGGCCATGCAGGACCTGCCGTCCGTGGTTGCT GGATCGTCACCCAGAACCAAGGGGCAGAAGACCGAGGACATCCTTGTGTCTGATGCACAG TCCTGTGAAATATGCCACGAAGCGTTCAGATCCAAAAATGTGCGTGTGCTGAAATGTGGG CACAAGTTCCACAAAGGGTGCTTCAAGCAGTGGCCTAAGGGGCAGGGCGCTTGCCCAGCC TGCCTGGACTGTGACCTGTCAGAAGAGTAGCCTGCCCTCCGCAGAGGCCCGCCTGCTGTT CTAGGTAGTTACAGCCACTAACAAGTCTCTACTCTTTGTTGATGTACTACCCTTGATGCA AAAAGCAAACACTTGAAGATTCTTTGCACTGTCGCAATGCTACTAAATGGAAATCTTTAA TATAGTTGAGAGTAAGTCATTCCCCAGCTCTGCTGAAACACCTTGATAACAGCCAGAAGG TGGCTGGTCGAGCTGGTGTACCAGCACCTTTCACTGTTGGGGCTGCTGCGGAGGGGCTCT CTGAGGTGAGTGCCTCAAAGCAGGACCCGAATTCTAAGTATTCCTGACCTATTAATGTGC CCCACGTCAAAGTCTTTATGAGATCAGTGTTCCTGAACACATGCCTGCAGTTTTCCTCAG AGATTCTGCATTTTAAAAACCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTTCTTAAGAACCTGAAGCTAATGAGCAGTGATTCTGCAACGTATCCTGACACTGAG TCTGACATACATTCATGGGAATCATTTCTTTCTGAGGTTAGAAAAGAAATTGAGAAAGCA GAGTCTCAGTTCGAAGAACAAATTCAAGCGATTAAAAATGGTTCTCGGCTCAGTGACCTT TCTAAAGTGCAGATTTCTGAGCTTTCATTTCCTGCTTGTAACACAGTTCTGCCTGCGTTA CTTCCTGAGCTGCCAGGCCATCATGATCAAGATCCCTCCACTTCTACAAGTCATGAGACC GGAGACCCGACAGCAGTTCTCGAGGATTCGAGTCTGCTCCCTGCCACCGATGGCCTGGAG GAGTCTCCCTCCTGCGAGCTGGAAGTCGCCCCTCTGCCCGAGCCTCAGAGCCCTGGCCAG GCGGCTGAGTCAGAGCCAAGCCTTGCCGCTGATCAGAAGTCACCCGTTGCTGTGGGACGT GCCACCCGTTCAAGCCAGTCTCCAAAAAAGCCGTTCAATAGTATCATCGAGCACCTGTCA GTGGTGTTCCCATGTTACAACAGCACCGAACTTGCTGGTTTTATTAAAAAAGTGAGAAAC AAAAACAAGAACTCGCTCTCTGGATTGAGTATTGACGAAATTGTCCAAAGAGTGACAGAA CACATTCTAGATGAAGAGAAGAAGAAAAAGCCAAATCCAGGAAAGGACCAGAGGCCCCCA GAGCCCAGCTGTGCCGCTTCTGTGACCGGGGCCATGCAGGACCTGCCGTCCGTGGTTGCT GGATCGTCACCCAGAACCAAGGGGCAGAAGACCGAGGACATCCTTGTGTCTGATGCACAG TCCTGTGAAATATGCCACGAAGCGTTCAGATCCAAAAATGTGCGTGTGCTGAAATGTGGG CACAAGTTCCACAAAGGGTGCTTCAAGCAGTGGCCTAAGGGGCAGGGCGCTTGCCCAGCC TGCCTGGACTGTGACCTGTCAGAAGAGTAGCCTGCCCTCCGCAGAGGCCCGCCTGCTGTT CTAGGTAGTTACAGCCACTAACAAGTCTCTACTCTTTGTTGATGTACTACCCTTGATGCA AAAAGCAAACACTTGAAGATTCTTTGCACTGTCGCAATGCTACTAAATGGAAATCTTTAA TATAGTTGAGAGTAAGTCATTCCCCAGCTCTGCTGAAACACCTTGATAACAGCCAGAAGG TGGCTGGTCGAGCTGGTGTACCAGCACCTTTCACTGTTGGGGCTGCTGCGGAGGGGCTCT CTGAGGTGAGTGCCTCAAAGCAGGACCCGAATTCTAAGTATTCCTGACCTATTAATGTGC CCCACGTCAAAGTCTTTATGAGATCAGTGTTCCTGAACACATGCCTGCAGTTTTCCTCAG AGATTCTGCATTTTAAAAACCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1186-1277, + strand, RNAz p=0.974779 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1186-1277, + strand, RNAz p=0.974779 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 227-570, gnl|bosTau2|chr1 (99511281-99511624) | |
| 227-570, gnl|canFam2|chr31 (34457418-34457854) | |
| 227-570, gnl|canFam2|chr31 (34457848-34457561) | |
| 227-570, gnl|hg17|chr21 (37489763-37490214) | |
| 227-570, gnl|Hg17|chr21 (37489847-37490214) | |
| 227-570, gnl|hg17|chrX (74744193-74744480) | |
| 227-570, gnl|loxAfr1|scaffold_11658 (12005-11626) | |
| 227-570, gnl|loxAfr1|scaffold_11658 (11635-11885) | |
| 227-570, gnl|mm7|chr16 (94751931-94752362) | |
| 227-570, gnl|mm7|chr16 (94752353-94752090) | |
| 227-570, gnl|Mm7|chr16 (94752016-94752362) | |
| 227-570, gnl|monDom2|scaffold_29 (4917204-4916769) | |
| 227-570, gnl|oryCun1|scaffold_116158 (5450-5892) | |
| 227-570, gnl|oryCun1|scaffold_116158 (5883-5612) | |
| 227-570, gnl|panTro1|chr22 (37521494-37521945) | |
| 227-570, gnl|panTro1|chrX (77343398-77343685) | |
| 227-570, gnl|rheMac2|chr3 (9420334-9419887) | |
| 227-570, gnl|rheMac2|chrX (74685325-74685612) | |
| 689-835, gnl|bosTau2|chr1 (99513841-99513987) | |
| 689-835, gnl|Hg17|chr21 (37492051-37492197) | |
| 689-835, gnl|Mm7|chr16 (94754747-94754893) | |
| 918-1399, gnl|bosTau2|chr1 (99519013-99519534) | |
| 918-1399, gnl|Hg17|chr21 (37495610-37496240) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 227-570, gnl|bosTau2|chr1 (99511281-99511624) | |
| 227-570, gnl|canFam2|chr31 (34457418-34457854) | |
| 227-570, gnl|canFam2|chr31 (34457848-34457561) | |
| 227-570, gnl|hg17|chr21 (37489763-37490214) | |
| 227-570, gnl|Hg17|chr21 (37489847-37490214) | |
| 227-570, gnl|hg17|chrX (74744193-74744480) | |
| 227-570, gnl|loxAfr1|scaffold_11658 (12005-11626) | |
| 227-570, gnl|loxAfr1|scaffold_11658 (11635-11885) | |
| 227-570, gnl|mm7|chr16 (94751931-94752362) | |
| 227-570, gnl|mm7|chr16 (94752353-94752090) | |
| 227-570, gnl|Mm7|chr16 (94752016-94752362) | |
| 227-570, gnl|monDom2|scaffold_29 (4917204-4916769) | |
| 227-570, gnl|oryCun1|scaffold_116158 (5450-5892) | |
| 227-570, gnl|oryCun1|scaffold_116158 (5883-5612) | |
| 227-570, gnl|panTro1|chr22 (37521494-37521945) | |
| 227-570, gnl|panTro1|chrX (77343398-77343685) | |
| 227-570, gnl|rheMac2|chr3 (9420334-9419887) | |
| 227-570, gnl|rheMac2|chrX (74685325-74685612) | |
| 689-835, gnl|bosTau2|chr1 (99513841-99513987) | |
| 689-835, gnl|Hg17|chr21 (37492051-37492197) | |
| 689-835, gnl|Mm7|chr16 (94754747-94754893) | |
| 918-1399, gnl|bosTau2|chr1 (99519013-99519534) | |
| 918-1399, gnl|Hg17|chr21 (37495610-37496240) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fce (0.271592) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |