Non-Coding RNA Search

Ss1.1-rebs25c_n9.5

Sequence:


               
               GTCGAGTCTCAGCTGCAGGTGAAGATGGAGCCGCAGGAGGAAGCCATCCCACTGCCATCC
TCAAAGAAGAAGAAAAAAGAAAAGGGGTACAAAGTGATGAGGGAGCCAGGGACTGAGGCT
CTAGAGCCAGAGACGAAACCTCTGGAGGTCCCAGGGGAGATGCTGGAGCCTGAACTTCTT
GCGCCTCAGGCTGAGGCCACTCTGGCATGCACCAAAAAGAGAAGGAAGAAAGAAAAGCGG
CAAGATGCGATGATGGAGCCAGCGACAGAGGTGGTGGAACCAAAGGAAGAGGCGGTGGAA
CCAAAGGAAGAGGTGGTGGAGCCCGAGCTGCCAGGTGCTGTTGAACCTCAGGCGGATCTA
ACATCTGCCAAAAAGAAGAAGAAGAAGAAAGAAAGAGAGCGCAGAACGACAGAGCCGGGG
ACTGAGATGATTACCCCACATGGGGAGATGATGGAGCCTGAGCTGCCAGTTGAGGGGGAG
CCTGAGGCCAGGCCAGATCCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGAGTCTCAGCTGCAGGTGAAGATGGAGCCGCAGGAGGAAGCCATCCCACTGCCATCC
TCAAAGAAGAAGAAAAAAGAAAAGGGGTACAAAGTGATGAGGGAGCCAGGGACTGAGGCT
CTAGAGCCAGAGACGAAACCTCTGGAGGTCCCAGGGGAGATGCTGGAGCCTGAACTTCTT
GCGCCTCAGGCTGAGGCCACTCTGGCATGCACCAAAAAGAGAAGGAAGAAAGAAAAGCGG
CAAGATGCGATGATGGAGCCAGCGACAGAGGTGGTGGAACCAAAGGAAGAGGCGGTGGAA
CCAAAGGAAGAGGTGGTGGAGCCCGAGCTGCCAGGTGCTGTTGAACCTCAGGCGGATCTA
ACATCTGCCAAAAAGAAGAAGAAGAAGAAAGAAAGAGAGCGCAGAACGACAGAGCCGGGG
ACTGAGATGATTACCCCACATGGGGAGATGATGGAGCCTGAGCTGCCAGTTGAGGGGGAG
CCTGAGGCCAGGCCAGATCCAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.631455

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.631455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-504, gnl|bosTau2|chr18 (38476247-38475762)
               

               
               1-504, gnl|Hg17|chr19 (50603985-50604440)
               

               
               1-504, gnl|Mm7|chr7 (17039666-17039123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr18 (38476247-38475762)
               

               
               1-504, gnl|Hg17|chr19 (50603985-50604440)
               

               
               1-504, gnl|Mm7|chr7 (17039666-17039123)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-504, gnl\|bosTau2\|chr18 (38476247-38475762)
	1-504, gnl\|Hg17\|chr19 (50603985-50604440)
	1-504, gnl\|Mm7\|chr7 (17039666-17039123)

	cki (0.165235)
	fat (0.147427)
	ebs (0.118301)
	spc (0.113366)
	nbm (0.0993246)