Non-Coding RNA Search

Ss1.1-rebs26c_a14.5

Sequence:


               
               CCGGCACCTGGCAAGAACAATGACTTCAGCAAACTTGTGGCTGGCGAGTACCTCAAGTTC
TTTGTCTTCACGGGCATGACTCTGGACCAAGCTCTCAGGGTGTTTCTGAAGGAGCTGGCT
TTAATGGGTGAGACCCAGGAACGGGAGCGTGTGCTGGCCCACTTCTCCCAGAGATACTTC
CAGTGCAATCCTGGAGCCCTGGTCCTCAGAGGACGGTGCGCACACGCTGACCTGTGCCCT
CATGCTACTCAACACGGATCTCCACGGCCATAACATTGGGAAGCGCATGACCTGCGGAGA
CTTCATTGGGAACCTGGAGGGCCTCAACGAAGGCGGCGACTTCCCCAGAGAGCTGCTCAA
GGCCTTGTACAGCTCCATCAAGAATGAAAAGTTGCAGTGGGCCATAGACGAGGAGGAGCT
GAGGCGCTCTCTGTCTGAGTTGGCCGACCCCAACCCCAAGGTCATCAAGAGAGTCAGCGG
GGGCAGCGGCAGCGGCTCCAGCCCCTTCCTGGACCTGACTCCCGAGCCCGGGGCTGCAGT
CTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGATCCCGACTGCAGGAAGACACC
TCGGGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCTACCT
GCAGAAGGAGGAGTACCAGCCTGGGAAAGCCCTGTCGGAGGCAGAGCTTAAGAATGCCAT
CAGCATCCACCACGCACTGGCCACTCGTGCCAGCGACTACAGCAAGCGGCCCCACGTCTT
CTACCTGCGCACAGCCGACTGGCGGGTCTTCCTCTTCCAGGCCCCGAGCCTGGAGCAGAT
GCAGTCCTGGATCACACGCATCAATGTGGTGGCCGCCATGTTCTCCGCACCCCCATTCCC
AGCTGCCGTCAGTTCCCAGAAGAAATTCAGCCGCCCTCTGCTGCCCAGCGCGGCCACCCG
CCTCTCCCAGGAGGAGCAGGTGCGGACCCACGAGGCCAAGCTAAAGGCCATGGCAAGTGA
GTTGCGGGAGCACCGGGCTGCTCAGCTGGGCAAGAAGGCCCGTGGCAAGGAGGCCGAGGA
GCAGCGGCAGAAGGAGGCCTATCTGGAGTTTGAGAAATCCCGCTACGGCACATACGCGGC
GCTGCTTCGGGTCAAGCTGAAGGCGGGCAGCGAAGAGCTGGATGCGGTAGAGGCAGCCCT
GGCCCAGGCCGGGAGCACAGAGGACGGCCTCCCCGCTCCTCATTCCAGTCCCTCCCTGCA
GCCCAACACCTCCAGCCAGCCCCGGGCTCAGTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCACCTGGCAAGAACAATGACTTCAGCAAACTTGTGGCTGGCGAGTACCTCAAGTTC
TTTGTCTTCACGGGCATGACTCTGGACCAAGCTCTCAGGGTGTTTCTGAAGGAGCTGGCT
TTAATGGGTGAGACCCAGGAACGGGAGCGTGTGCTGGCCCACTTCTCCCAGAGATACTTC
CAGTGCAATCCTGGAGCCCTGGTCCTCAGAGGACGGTGCGCACACGCTGACCTGTGCCCT
CATGCTACTCAACACGGATCTCCACGGCCATAACATTGGGAAGCGCATGACCTGCGGAGA
CTTCATTGGGAACCTGGAGGGCCTCAACGAAGGCGGCGACTTCCCCAGAGAGCTGCTCAA
GGCCTTGTACAGCTCCATCAAGAATGAAAAGTTGCAGTGGGCCATAGACGAGGAGGAGCT
GAGGCGCTCTCTGTCTGAGTTGGCCGACCCCAACCCCAAGGTCATCAAGAGAGTCAGCGG
GGGCAGCGGCAGCGGCTCCAGCCCCTTCCTGGACCTGACTCCCGAGCCCGGGGCTGCAGT
CTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGATCCCGACTGCAGGAAGACACC
TCGGGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCTACCT
GCAGAAGGAGGAGTACCAGCCTGGGAAAGCCCTGTCGGAGGCAGAGCTTAAGAATGCCAT
CAGCATCCACCACGCACTGGCCACTCGTGCCAGCGACTACAGCAAGCGGCCCCACGTCTT
CTACCTGCGCACAGCCGACTGGCGGGTCTTCCTCTTCCAGGCCCCGAGCCTGGAGCAGAT
GCAGTCCTGGATCACACGCATCAATGTGGTGGCCGCCATGTTCTCCGCACCCCCATTCCC
AGCTGCCGTCAGTTCCCAGAAGAAATTCAGCCGCCCTCTGCTGCCCAGCGCGGCCACCCG
CCTCTCCCAGGAGGAGCAGGTGCGGACCCACGAGGCCAAGCTAAAGGCCATGGCAAGTGA
GTTGCGGGAGCACCGGGCTGCTCAGCTGGGCAAGAAGGCCCGTGGCAAGGAGGCCGAGGA
GCAGCGGCAGAAGGAGGCCTATCTGGAGTTTGAGAAATCCCGCTACGGCACATACGCGGC
GCTGCTTCGGGTCAAGCTGAAGGCGGGCAGCGAAGAGCTGGATGCGGTAGAGGCAGCCCT
GGCCCAGGCCGGGAGCACAGAGGACGGCCTCCCCGCTCCTCATTCCAGTCCCTCCCTGCA
GCCCAACACCTCCAGCCAGCCCCGGGCTCAGTGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19705469|ref|NP_599197.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19705469|ref|NP_599197.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1152-1271, - strand, RNAz p=0.842485

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1152-1271, - strand, RNAz p=0.842485

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               96-212, gnl|bosTau2|chr26 (14114226-14114341)
               

               
               96-212, gnl|Hg17|chr10 (104161569-104161454)
               

               
               96-212, gnl|Mm7|chr19 (46217000-46216885)
               


               
               403-596, gnl|bosTau2|chr26 (14120449-14120642)
               

               
               403-596, gnl|Hg17|chr10 (104155286-104155093)
               

               
               403-596, gnl|Mm7|chr19 (46211440-46211247)
               


               
               666-826, gnl|bosTau2|chr26 (14120914-14121074)
               

               
               666-826, gnl|Hg17|chr10 (104154804-104154644)
               

               
               666-826, gnl|Mm7|chr19 (46210969-46210809)
               


               
               1113-1294, gnl|bosTau2|chr26 (14122429-14122610)
               

               
               1113-1294, gnl|Hg17|chr10 (104153179-104152998)
               

               
               1113-1294, gnl|Mm7|chr19 (46209565-46209384)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-212, gnl|bosTau2|chr26 (14114226-14114341)
               

               
               96-212, gnl|Hg17|chr10 (104161569-104161454)
               

               
               96-212, gnl|Mm7|chr19 (46217000-46216885)
               


               
               403-596, gnl|bosTau2|chr26 (14120449-14120642)
               

               
               403-596, gnl|Hg17|chr10 (104155286-104155093)
               

               
               403-596, gnl|Mm7|chr19 (46211440-46211247)
               


               
               666-826, gnl|bosTau2|chr26 (14120914-14121074)
               

               
               666-826, gnl|Hg17|chr10 (104154804-104154644)
               

               
               666-826, gnl|Mm7|chr19 (46210969-46210809)
               


               
               1113-1294, gnl|bosTau2|chr26 (14122429-14122610)
               

               
               1113-1294, gnl|Hg17|chr10 (104153179-104152998)
               

               
               1113-1294, gnl|Mm7|chr19 (46209565-46209384)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	96-212, gnl\|bosTau2\|chr26 (14114226-14114341)
	96-212, gnl\|Hg17\|chr10 (104161569-104161454)
	96-212, gnl\|Mm7\|chr19 (46217000-46216885)

	403-596, gnl\|bosTau2\|chr26 (14120449-14120642)
	403-596, gnl\|Hg17\|chr10 (104155286-104155093)
	403-596, gnl\|Mm7\|chr19 (46211440-46211247)

	666-826, gnl\|bosTau2\|chr26 (14120914-14121074)
	666-826, gnl\|Hg17\|chr10 (104154804-104154644)
	666-826, gnl\|Mm7\|chr19 (46210969-46210809)

	1113-1294, gnl\|bosTau2\|chr26 (14122429-14122610)
	1113-1294, gnl\|Hg17\|chr10 (104153179-104152998)
	1113-1294, gnl\|Mm7\|chr19 (46209565-46209384)