Non-Coding RNA Search

Ss1.1-rebs26c_b15.5

Sequence:


               
               GGGTCCTCTGACCTCTACAATGGGAAGGACTCAGGCCATTTAATCACCCTACAAGATGCC
AAGGAGATCCCAGGAAGTCCAGCTTCTTACACTGATGCCAGTCAATAAACTTGGGCAAGG
AAGATAAAGAGTATGGGCACGAGCTGACAGGTAAGGATGAAAGACAAAGAAGGCAGAGAG
TAACAAAAACAGAGAGGAGAGGATTTTGGGATCAGAAAGGAAAGCCTTTGCTACCCTGAA
ATGTACTGCTAGTGCCAGTAAGCATTTCCAGGTCCCAGAATGGGAGAAATTCACCTGTTG
GTAATATAATCATATCCTTCCCTTGGAGCTAATTCTTCTATTAACACTTAATTTTTATGT
GTTTCATTCTACAACAGAAGGGAGCTGAAGCCATTTCTTTTAGGAGTAAAGATAAAAGGA
CAGGAAAAGATTCAAAGCTCTAAGAGAAACAAAGCTTTTCTAGGCATAAACCTAGAAACC
GGAAGGGCTCAATAAGCAGAGATGGAAAAATGATCTGTCTAGTTCGAGAAAGCTATCCAC
AGAACAAATGACTCAGAAACTTGAACTCCAACCTCCCTTCTTTGTATCGCTTTTGTTTCC
ATTTTCCCAGGACACGAAACATGTCCCCCACAGCGTTCTTACTTCAAAAACTCAAACACC
TATCCCAAGATCACTCTGAAAGTAATTTTGCACAGACATCTCCTCCACCCCAGTGCCTGC
CTGGAACTCACCCAAGGTCACCACACAACTTGGTTGTGAACCAACTGCCTTAACCTTAGG
GGAAAGGGGGAGAGCTGGACTGGGAGGTCAGAGGTGAAGGGGCAGAGGTGAGGACTTCAC
AAGGTTGGTCTGTCAGAGCTTGAGCCGAAGCCAAGTCGGTGATGGAAAGGGATGGCTTGG
CCCAGGAAAGACCTGTGGGTTGTGCTAGTTTCTAAAGAGATGACTACCCAGGAAGTAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCCTCTGACCTCTACAATGGGAAGGACTCAGGCCATTTAATCACCCTACAAGATGCC
AAGGAGATCCCAGGAAGTCCAGCTTCTTACACTGATGCCAGTCAATAAACTTGGGCAAGG
AAGATAAAGAGTATGGGCACGAGCTGACAGGTAAGGATGAAAGACAAAGAAGGCAGAGAG
TAACAAAAACAGAGAGGAGAGGATTTTGGGATCAGAAAGGAAAGCCTTTGCTACCCTGAA
ATGTACTGCTAGTGCCAGTAAGCATTTCCAGGTCCCAGAATGGGAGAAATTCACCTGTTG
GTAATATAATCATATCCTTCCCTTGGAGCTAATTCTTCTATTAACACTTAATTTTTATGT
GTTTCATTCTACAACAGAAGGGAGCTGAAGCCATTTCTTTTAGGAGTAAAGATAAAAGGA
CAGGAAAAGATTCAAAGCTCTAAGAGAAACAAAGCTTTTCTAGGCATAAACCTAGAAACC
GGAAGGGCTCAATAAGCAGAGATGGAAAAATGATCTGTCTAGTTCGAGAAAGCTATCCAC
AGAACAAATGACTCAGAAACTTGAACTCCAACCTCCCTTCTTTGTATCGCTTTTGTTTCC
ATTTTCCCAGGACACGAAACATGTCCCCCACAGCGTTCTTACTTCAAAAACTCAAACACC
TATCCCAAGATCACTCTGAAAGTAATTTTGCACAGACATCTCCTCCACCCCAGTGCCTGC
CTGGAACTCACCCAAGGTCACCACACAACTTGGTTGTGAACCAACTGCCTTAACCTTAGG
GGAAAGGGGGAGAGCTGGACTGGGAGGTCAGAGGTGAAGGGGCAGAGGTGAGGACTTCAC
AAGGTTGGTCTGTCAGAGCTTGAGCCGAAGCCAAGTCGGTGATGGAAAGGGATGGCTTGG
CCCAGGAAAGACCTGTGGGTTGTGCTAGTTTCTAAAGAGATGACTACCCAGGAAGTAGGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-357, gnl|bosTau2|chr15 (13561663-13561299)
               

               
               1-357, gnl|Hg17|chr11 (116662748-116662371)
               

               
               1-357, gnl|Mm7|chr9 (45821509-45821818)
               


               
               385-960, gnl|bosTau2|chr15 (13561140-13560571)
               

               
               385-960, gnl|Hg17|chr11 (116662343-116661783)
               

               
               385-960, gnl|Mm7|chr9 (45821851-45822381)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-357, gnl|bosTau2|chr15 (13561663-13561299)
               

               
               1-357, gnl|Hg17|chr11 (116662748-116662371)
               

               
               1-357, gnl|Mm7|chr9 (45821509-45821818)
               


               
               385-960, gnl|bosTau2|chr15 (13561140-13560571)
               

               
               385-960, gnl|Hg17|chr11 (116662343-116661783)
               

               
               385-960, gnl|Mm7|chr9 (45821851-45822381)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	1-357, gnl\|bosTau2\|chr15 (13561663-13561299)
	1-357, gnl\|Hg17\|chr11 (116662748-116662371)
	1-357, gnl\|Mm7\|chr9 (45821509-45821818)

	385-960, gnl\|bosTau2\|chr15 (13561140-13560571)
	385-960, gnl\|Hg17\|chr11 (116662343-116661783)
	385-960, gnl\|Mm7\|chr9 (45821851-45822381)

	fcc (0.39557)
	fbs (0.175346)
	nco (0.161734)
	ssp (0.13552)
	pla (0.133672)
	ebs (0.118301)