Non-Coding RNA Search

Ss1.1-rebs26c_b8.5

Sequence:


               
               CTCGGAACGGGCAGCGGCTCCCGGAGCGAGCGAGAGAGCAGCAAGCCGGGACCCTCCCGG
CTGAGCCAGCCGAATAGCCAGCGAACCGAGTCCGCAACGATCCCACGCCTCCGAGCCCCG
AAGCCGTCCCCCACCGGCCAGTGTCCCCGCTGTCCTCCCTGACCCATGGCGCTGAAGCGG
ATTCAGAAAGAATTAAGTGATCTACAGCGTGACCCACCTGCTCACTGTTCGGCTGGACCT
GTGGGAGATGACCTGTTCCACTGGCAAGCAACTATTATGGGGCCTCCTGATAGCGCATAT
CAAGGTGGAGTCTTCTTTCTCACTGTACATTTCCCGACAGACTATCCTTTTAAACCACCA
AAGATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGT
CTCGATATCCTGAGGTCACAGTGGTCACCGGCTCTGACTGTATCAAAAGTTTTATTGTCC
ATATGTTCTCTACTTTGTGACCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAA
ATCTACAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTCAGAAATAT
GCAATGTAAAATCAAAAAAATTTTCATATATACCAGAGTACTGTAAAATCTAGGTTTTTT
TTCAACATTGGCAGTAAATCGAGCACTGTTTACTGTTTCATTGTACCATGAAATCTTTTG
ATTTTTACCCATTTTAAATGTATTTCTGAAGCAAGACAAAAGAAACTTCCAAAAATATCC
TTAAGACTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGAACGGGCAGCGGCTCCCGGAGCGAGCGAGAGAGCAGCAAGCCGGGACCCTCCCGG
CTGAGCCAGCCGAATAGCCAGCGAACCGAGTCCGCAACGATCCCACGCCTCCGAGCCCCG
AAGCCGTCCCCCACCGGCCAGTGTCCCCGCTGTCCTCCCTGACCCATGGCGCTGAAGCGG
ATTCAGAAAGAATTAAGTGATCTACAGCGTGACCCACCTGCTCACTGTTCGGCTGGACCT
GTGGGAGATGACCTGTTCCACTGGCAAGCAACTATTATGGGGCCTCCTGATAGCGCATAT
CAAGGTGGAGTCTTCTTTCTCACTGTACATTTCCCGACAGACTATCCTTTTAAACCACCA
AAGATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGT
CTCGATATCCTGAGGTCACAGTGGTCACCGGCTCTGACTGTATCAAAAGTTTTATTGTCC
ATATGTTCTCTACTTTGTGACCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAA
ATCTACAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTCAGAAATAT
GCAATGTAAAATCAAAAAAATTTTCATATATACCAGAGTACTGTAAAATCTAGGTTTTTT
TTCAACATTGGCAGTAAATCGAGCACTGTTTACTGTTTCATTGTACCATGAAATCTTTTG
ATTTTTACCCATTTTAAATGTATTTCTGAAGCAAGACAAAAGAAACTTCCAAAAATATCC
TTAAGACTGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21703838|ref|NP_663395.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21703838|ref|NP_663395.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               166-607, gnl|bosTau2|chr14 (47054168-47054608)
               

               
               166-607, gnl|Hg17|chr20 (5221477-5221036)
               

               
               166-607, gnl|Mm7|chrX (69881471-69881030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-607, gnl|bosTau2|chr14 (47054168-47054608)
               

               
               166-607, gnl|Hg17|chr20 (5221477-5221036)
               

               
               166-607, gnl|Mm7|chrX (69881471-69881030)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbl (0.688784)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	166-607, gnl\|bosTau2\|chr14 (47054168-47054608)
	166-607, gnl\|Hg17\|chr20 (5221477-5221036)
	166-607, gnl\|Mm7\|chrX (69881471-69881030)

	cbl (0.688784)
	ldo (0.194005)
	ton (0.1755)
	bla (0.124347)
	ebs (0.118301)