Non-Coding RNA Search

Ss1.1-rebs26c_h1.5

Sequence:


               
               TGGACATCCGTTTTTCTGTTGCCCAGACCTGTGTTGGCAGTCACATACGAACTATGTTAT
GCTTCTCAGTGCTTTTCCTTCTTCTTTTTTTTTTTTTTTGATAAGGTGGATATCAAAAAT
AGTTGCTGTGCAAAAGTTAGTAGTCTTCTTCAAGAAGAAAACCAATTCCTTTTCTAATAT
CCTGTGAAATTGCTTCATTCATTCCTTTATTTTTAAGCCAAATGTCAGCAGAGTACTGCT
GCTTTTATCTAGTAATTTTGATATGTAAGTATTAATGCATTTAAAAAATATGTCTACATT
GAAAAATGTTTTTACCAGTGTCTTGCCTCTTAAGCTTTGTTCAGATGTTCTGGAAGAGAC
CAGTCTGTGCACTGGGGGTGTGTCTTGTGTCAGTTATACATTGTAGACCAAATGTGATTT
TAAATGAAATTGTTGAGTTATTGGTGAATTTTTTGAATTGTAAACTGATTTCCAGTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACATCCGTTTTTCTGTTGCCCAGACCTGTGTTGGCAGTCACATACGAACTATGTTAT
GCTTCTCAGTGCTTTTCCTTCTTCTTTTTTTTTTTTTTTGATAAGGTGGATATCAAAAAT
AGTTGCTGTGCAAAAGTTAGTAGTCTTCTTCAAGAAGAAAACCAATTCCTTTTCTAATAT
CCTGTGAAATTGCTTCATTCATTCCTTTATTTTTAAGCCAAATGTCAGCAGAGTACTGCT
GCTTTTATCTAGTAATTTTGATATGTAAGTATTAATGCATTTAAAAAATATGTCTACATT
GAAAAATGTTTTTACCAGTGTCTTGCCTCTTAAGCTTTGTTCAGATGTTCTGGAAGAGAC
CAGTCTGTGCACTGGGGGTGTGTCTTGTGTCAGTTATACATTGTAGACCAAATGTGATTT
TAAATGAAATTGTTGAGTTATTGGTGAATTTTTTGAATTGTAAACTGATTTCCAGTGTAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-203, + strand, RNAz p=0.895558
               

               
               84-198, - strand, RNAz p=0.511778

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-203, + strand, RNAz p=0.895558
               

               
               84-198, - strand, RNAz p=0.511778

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               13-480, gnl|bosTau2|chr16 (19206677-19207160)
               

               
               13-480, gnl|canFam2|chr31 (31659385-31660186)
               

               
               13-480, gnl|echTel1|scaffold_54847 (610-1400)
               

               
               13-480, gnl|galGal2|chr1 (99393976-99394692)
               

               
               13-480, gnl|hg17|chr21 (34399222-34400021)
               

               
               13-480, gnl|Hg17|chr21 (34399413-34399896)
               

               
               13-480, gnl|mm7|chr16 (92136650-92137440)
               

               
               13-480, gnl|Mm7|chr16 (92136828-92137315)
               

               
               13-480, gnl|monDom2|scaffold_29 (13529940-13529181)
               

               
               13-480, gnl|oryCun1|scaffold_198353 (23897-24702)
               

               
               13-480, gnl|panTro1|chr22 (34390269-34391068)
               

               
               13-480, gnl|rheMac2|chr3 (12462826-12462033)
               

               
               13-480, gnl|rn3|chr11 (32128922-32129700)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-480, gnl|bosTau2|chr16 (19206677-19207160)
               

               
               13-480, gnl|canFam2|chr31 (31659385-31660186)
               

               
               13-480, gnl|echTel1|scaffold_54847 (610-1400)
               

               
               13-480, gnl|galGal2|chr1 (99393976-99394692)
               

               
               13-480, gnl|hg17|chr21 (34399222-34400021)
               

               
               13-480, gnl|Hg17|chr21 (34399413-34399896)
               

               
               13-480, gnl|mm7|chr16 (92136650-92137440)
               

               
               13-480, gnl|Mm7|chr16 (92136828-92137315)
               

               
               13-480, gnl|monDom2|scaffold_29 (13529940-13529181)
               

               
               13-480, gnl|oryCun1|scaffold_198353 (23897-24702)
               

               
               13-480, gnl|panTro1|chr22 (34390269-34391068)
               

               
               13-480, gnl|rheMac2|chr3 (12462826-12462033)
               

               
               13-480, gnl|rn3|chr11 (32128922-32129700)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               vin (0.332557)
               

               
               kid (0.259471)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	51-203, + strand, RNAz p=0.895558
	84-198, - strand, RNAz p=0.511778

	13-480, gnl\|bosTau2\|chr16 (19206677-19207160)
	13-480, gnl\|canFam2\|chr31 (31659385-31660186)
	13-480, gnl\|echTel1\|scaffold_54847 (610-1400)
	13-480, gnl\|galGal2\|chr1 (99393976-99394692)
	13-480, gnl\|hg17\|chr21 (34399222-34400021)
	13-480, gnl\|Hg17\|chr21 (34399413-34399896)
	13-480, gnl\|mm7\|chr16 (92136650-92137440)
	13-480, gnl\|Mm7\|chr16 (92136828-92137315)
	13-480, gnl\|monDom2\|scaffold_29 (13529940-13529181)
	13-480, gnl\|oryCun1\|scaffold_198353 (23897-24702)
	13-480, gnl\|panTro1\|chr22 (34390269-34391068)
	13-480, gnl\|rheMac2\|chr3 (12462826-12462033)
	13-480, gnl\|rn3\|chr11 (32128922-32129700)

	vin (0.332557)
	kid (0.259471)
	col (0.195008)
	eye (0.170503)
	tra (0.123092)
	ebs (0.118301)