Non-Coding RNA Search

Ss1.1-rebs26c_j10.5

Sequence:


               
               TGGGATGGTACCATTAGTATCATTTAGCTGTTTCTGGATCTTTTAAAAAATTAGGCGGTT
GCTATTCTTCATACTTAAAATGTATTTCCTCTATAGAAAAGTAACATATATTTTATGGTC
CAATCAGCAGTCTTACACATGAATTTTTGTATATTTGCTTGCAAAGTAGGGACCAGCTAT
ATGTTCCCTTTAACAAGTATCTAGACCTTTTTGTGTGTCATCAGCAATAGTCTTAATGCA
GACTATTCTCCTACCTCACATCATGAGAGGCAGAGGGGTGTAGGCCCCCTTCCCAAACTG
TAAGTCATCCTTCTTAGTTGTCAGGCTTTCTGACATCGCAGTGACCACTGCCCATGGAAT
AATGGTATTCTGACCATTGGCCTGGCTCTGACAGTGCGTTTGTTCATTCAGCAAATGTTC
ATGAGTAATTACCATGAACTGGAAGTATCAGCTCTGTGTTCTCCCCTGCTGCCACGTGGT
GATTTACTGACATTGGGAGATTGTACTTGGGCTATCTAGCACATGCATTTGGCCCTAAAA
TAGCTGTTTCCAATAAGATTGTGCAGTTTATGTTCACAGCTCTTTTATCTAGACATACAT
TTCCTTATAGAGCTGTCCTGGTTAAAAATCAGTTCAGGATGCTGCCATTAACCCCTGTTG
TCTTCCTATAGCTTTGACAATGTCAGGGAGAGTCCTCTGTGTTAAGATAACCCACCATTT
TTATGTGTGTCCATAGAATCTGTTTGGTAGGTTGGTGTGCTGGCTCAGAGTCACACCATG
GGGCAGTTAAATGTTTAAGTAAAACATCTGCCTACAGCTCCCTTTCCACTCTAGTGCCTT
CCTTGATCTTTTTCCTGAGCTGCTTGTATCCCCTAATCCCCTTTATTAGGAAGTTTTCCT
ATCACCATCTCCTGTTCTATTTGGAACTTGTTTTCCAATCCTTCAACAACCTTTGCAGCT
AATCCTATGTCTTAGAAGGGCTGGACACCTGTCTCTGGGTCCTGATTTTCAACTAGTTGT
TTGGTCTCCAAGAGTCAGGCAGTAAAATAGATTGACTTCAGTCAGCTCTCAAATATGTCA
ACCTGGGAGTTCCTTTTATGGCTCAGAAGGTTACAAACCTGACTAGTATTCATGAGGATG
CAGGTTCAATCCCTGGCCTCACTCTGTGGGTTAAGGATCCAGTGTTGGTGTGAGCTGTGG
TGTAGGTCACAAACTTGGGTACCGCATTGCCATGGCTGTGATGTAGGCCGTCAGCTGCAG
CTCCAATTCGACCCCTAGCCTGGGAACTTCCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATGGTACCATTAGTATCATTTAGCTGTTTCTGGATCTTTTAAAAAATTAGGCGGTT
GCTATTCTTCATACTTAAAATGTATTTCCTCTATAGAAAAGTAACATATATTTTATGGTC
CAATCAGCAGTCTTACACATGAATTTTTGTATATTTGCTTGCAAAGTAGGGACCAGCTAT
ATGTTCCCTTTAACAAGTATCTAGACCTTTTTGTGTGTCATCAGCAATAGTCTTAATGCA
GACTATTCTCCTACCTCACATCATGAGAGGCAGAGGGGTGTAGGCCCCCTTCCCAAACTG
TAAGTCATCCTTCTTAGTTGTCAGGCTTTCTGACATCGCAGTGACCACTGCCCATGGAAT
AATGGTATTCTGACCATTGGCCTGGCTCTGACAGTGCGTTTGTTCATTCAGCAAATGTTC
ATGAGTAATTACCATGAACTGGAAGTATCAGCTCTGTGTTCTCCCCTGCTGCCACGTGGT
GATTTACTGACATTGGGAGATTGTACTTGGGCTATCTAGCACATGCATTTGGCCCTAAAA
TAGCTGTTTCCAATAAGATTGTGCAGTTTATGTTCACAGCTCTTTTATCTAGACATACAT
TTCCTTATAGAGCTGTCCTGGTTAAAAATCAGTTCAGGATGCTGCCATTAACCCCTGTTG
TCTTCCTATAGCTTTGACAATGTCAGGGAGAGTCCTCTGTGTTAAGATAACCCACCATTT
TTATGTGTGTCCATAGAATCTGTTTGGTAGGTTGGTGTGCTGGCTCAGAGTCACACCATG
GGGCAGTTAAATGTTTAAGTAAAACATCTGCCTACAGCTCCCTTTCCACTCTAGTGCCTT
CCTTGATCTTTTTCCTGAGCTGCTTGTATCCCCTAATCCCCTTTATTAGGAAGTTTTCCT
ATCACCATCTCCTGTTCTATTTGGAACTTGTTTTCCAATCCTTCAACAACCTTTGCAGCT
AATCCTATGTCTTAGAAGGGCTGGACACCTGTCTCTGGGTCCTGATTTTCAACTAGTTGT
TTGGTCTCCAAGAGTCAGGCAGTAAAATAGATTGACTTCAGTCAGCTCTCAAATATGTCA
ACCTGGGAGTTCCTTTTATGGCTCAGAAGGTTACAAACCTGACTAGTATTCATGAGGATG
CAGGTTCAATCCCTGGCCTCACTCTGTGGGTTAAGGATCCAGTGTTGGTGTGAGCTGTGG
TGTAGGTCACAAACTTGGGTACCGCATTGCCATGGCTGTGATGTAGGCCGTCAGCTGCAG
CTCCAATTCGACCCCTAGCCTGGGAACTTCCATATG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1084, gnl|bosTau2|chr15 (14386108-14387190)
               

               
               1-1084, gnl|Hg17|chr11 (118678878-118680027)
               

               
               1-1084, gnl|Mm7|chr9 (44082274-44081242)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1084, gnl|bosTau2|chr15 (14386108-14387190)
               

               
               1-1084, gnl|Hg17|chr11 (118678878-118680027)
               

               
               1-1084, gnl|Mm7|chr9 (44082274-44081242)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               bla (0.248694)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	1-1084, gnl\|bosTau2\|chr15 (14386108-14387190)
	1-1084, gnl\|Hg17\|chr11 (118678878-118680027)
	1-1084, gnl\|Mm7\|chr9 (44082274-44081242)

	bla (0.248694)
	lin (0.145603)
	spl (0.143184)
	hlv (0.139256)
	thg (0.126791)
	ebs (0.118301)
	cbl (0.114797)