Ss1.1-rebs26c_j7.5
|
GCCGTCCGCGTCGCCCGGAGCCCGGAGTCGCGACACCCCAGGGATGCCTGCGCCCCAGAC
GACCCCCGACCACAGCCCCCGCGCTTTCGCAAGGCCTGTCTGGAGCATGTTGCCTGCAGC
CATGAAGGGCCTCGGCCTGGTGCTGCTGGCCGCCCTGCTGTGCTCTGCGCCGGCTCAGGG
CCTGTGGTGCCAGGACTGCACGCTGACCACCAACTCCAGCCATTGCACCCCGAAGCAGTG
CCAGCCGTCGGACACGGTGTGTGCCAGTGTTCGGATCACAGATCCCAGCAGCAGCAGGAA
GGATCACTCCGTGAACAAGATGTGTGCCTCGTCCTGTGACTTCGTGAAGCGGCACTTTTT
CTCAGACTATCTGATGGGCTTCATTAACTCTGGGATCTTGAAGGTGGACGTGGCCTGCTG
TGAGAAGGACCTGTGTAACGGGGCCGCCAGTGCGGGGCGCAGCCCCTGGGCGCTGGCCGG
GGGCCTCCTGCTCAGCCTGGGGCCCGCTCTCCTCTGGGCTGGGCCCTGAGGTCCCCTCCC
TCCCGCAGGGCTTCTGAGCCTTTCCCATCCCACCCGCGCCTGTGGCTGCCCTCCCCCCAG
CCTGGTCGGGCTGGCGCTGGGGGCAGCCTCGGCCCCGCTCCCAGTCTCCGCCTTCGTTCT
TTCCTGTCTCTGCACCAGCTCCAGGTCTCAACCAGCAGGACCTCTCCAGGAATCGGGGGC
CTGGCAGGAGGCCGGGGGCGGGGGGGGGGGGGGCCCCGGGACCCTAGGTCTCAGGCTGCC
CAACAGCCTGGCTCTGAGGGCATCTTCTCCGGAGAAATAAAGTCACTTCTAAGTCCAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCGTCCGCGTCGCCCGGAGCCCGGAGTCGCGACACCCCAGGGATGCCTGCGCCCCAGAC
GACCCCCGACCACAGCCCCCGCGCTTTCGCAAGGCCTGTCTGGAGCATGTTGCCTGCAGC
CATGAAGGGCCTCGGCCTGGTGCTGCTGGCCGCCCTGCTGTGCTCTGCGCCGGCTCAGGG
CCTGTGGTGCCAGGACTGCACGCTGACCACCAACTCCAGCCATTGCACCCCGAAGCAGTG
CCAGCCGTCGGACACGGTGTGTGCCAGTGTTCGGATCACAGATCCCAGCAGCAGCAGGAA
GGATCACTCCGTGAACAAGATGTGTGCCTCGTCCTGTGACTTCGTGAAGCGGCACTTTTT
CTCAGACTATCTGATGGGCTTCATTAACTCTGGGATCTTGAAGGTGGACGTGGCCTGCTG
TGAGAAGGACCTGTGTAACGGGGCCGCCAGTGCGGGGCGCAGCCCCTGGGCGCTGGCCGG
GGGCCTCCTGCTCAGCCTGGGGCCCGCTCTCCTCTGGGCTGGGCCCTGAGGTCCCCTCCC
TCCCGCAGGGCTTCTGAGCCTTTCCCATCCCACCCGCGCCTGTGGCTGCCCTCCCCCCAG
CCTGGTCGGGCTGGCGCTGGGGGCAGCCTCGGCCCCGCTCCCAGTCTCCGCCTTCGTTCT
TTCCTGTCTCTGCACCAGCTCCAGGTCTCAACCAGCAGGACCTCTCCAGGAATCGGGGGC
CTGGCAGGAGGCCGGGGGCGGGGGGGGGGGGGGCCCCGGGACCCTAGGTCTCAGGCTGCC
CAACAGCCTGGCTCTGAGGGCATCTTCTCCGGAGAAATAAAGTCACTTCTAAGTCCAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
36-173, gnl|bosTau2|chr14 (2383551-2383413) |
|
36-173, gnl|canFam2|chr13 (40010940-40011536) |
|
36-173, gnl|hg17|chr8 (144311975-144312587) |
|
36-173, gnl|Hg17|chr8 (144312511-144312373) |
|
36-173, gnl|mm7|chr15 (75648436-75648898) |
|
36-173, gnl|Mm7|chr15 (75648817-75648679) |
|
36-173, gnl|monDom2|scaffold_189 (1297584-1296886) |
|
36-173, gnl|panTro1|chr7 (147575209-147575821) |
|
36-173, gnl|rheMac2|chr8 (145784405-145785015) |
|
36-173, gnl|rn3|chr7 (113545801-113546267) |
| |
|
294-833, gnl|bosTau2|chr14 (2382271-2381727) |
|
294-833, gnl|Hg17|chr8 (144311277-144310714) |
|
294-833, gnl|Mm7|chr15 (75647889-75647300) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-173, gnl|bosTau2|chr14 (2383551-2383413) |
|
36-173, gnl|canFam2|chr13 (40010940-40011536) |
|
36-173, gnl|hg17|chr8 (144311975-144312587) |
|
36-173, gnl|Hg17|chr8 (144312511-144312373) |
|
36-173, gnl|mm7|chr15 (75648436-75648898) |
|
36-173, gnl|Mm7|chr15 (75648817-75648679) |
|
36-173, gnl|monDom2|scaffold_189 (1297584-1296886) |
|
36-173, gnl|panTro1|chr7 (147575209-147575821) |
|
36-173, gnl|rheMac2|chr8 (145784405-145785015) |
|
36-173, gnl|rn3|chr7 (113545801-113546267) |
| |
|
294-833, gnl|bosTau2|chr14 (2382271-2381727) |
|
294-833, gnl|Hg17|chr8 (144311277-144310714) |
|
294-833, gnl|Mm7|chr15 (75647889-75647300) |
|
fcc (0.39557) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
mcp (0.170648) |
|
fcc (0.39557) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
mcp (0.170648) |
