Ss1.1-rebs26c_l4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGATGAACGGGGGCGACCTCAAGTTCCACATCTACCACATGGGCCAGGCTGGCTTCCCA GAGCCGCGGGCAGTCTTCTATGCAGCGGAGATCTGCTGTGGCCTGGAGGACCTGCACCGG GAACGCATCGTATACAGGGACCTGAAGCCAGAGAACATTCTACTGGATGACCATGGTCAT ATCCGCATCTCTGACCTGGGGCTGGCAGTGCATGTACCCGAGGGCCAGACAATCAAGGGC CGTGTGGGCACCGTGGGCTACATGGCCCCAGAGGTGGTGAAGAACGAAAGGTACACGTTC AGCCCAGACTGGTGGGCTCTGGGCTGCCTCCTGTATGAGATGATCGCAGGCCAGTCGCCT TTCCAGCAGAGGAAAAAGAAGATCAAGCGGGAGGAGGTGGAGCGCTTGGTGAAGGAGGTG CCCGAGGAGTACTCGGAGCACTTTTCTCCGCAGGCCCGCTCGCTCTGCTCCCAGCTCCTC TGCAAGGACCCTGCTGAGCGCCTGGGGTGTGGTGGGGGCGGTGCCCGAGAAGTAAAGGAG CACCCCCTCTTCAAGAAGCTAAACTTCAAGCGACTGGGAGCTGGCATGCTAGAACCGCCC TTCAAGCCTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGATGAACGGGGGCGACCTCAAGTTCCACATCTACCACATGGGCCAGGCTGGCTTCCCA GAGCCGCGGGCAGTCTTCTATGCAGCGGAGATCTGCTGTGGCCTGGAGGACCTGCACCGG GAACGCATCGTATACAGGGACCTGAAGCCAGAGAACATTCTACTGGATGACCATGGTCAT ATCCGCATCTCTGACCTGGGGCTGGCAGTGCATGTACCCGAGGGCCAGACAATCAAGGGC CGTGTGGGCACCGTGGGCTACATGGCCCCAGAGGTGGTGAAGAACGAAAGGTACACGTTC AGCCCAGACTGGTGGGCTCTGGGCTGCCTCCTGTATGAGATGATCGCAGGCCAGTCGCCT TTCCAGCAGAGGAAAAAGAAGATCAAGCGGGAGGAGGTGGAGCGCTTGGTGAAGGAGGTG CCCGAGGAGTACTCGGAGCACTTTTCTCCGCAGGCCCGCTCGCTCTGCTCCCAGCTCCTC TGCAAGGACCCTGCTGAGCGCCTGGGGTGTGGTGGGGGCGGTGCCCGAGAAGTAAAGGAG CACCCCCTCTTCAAGAAGCTAAACTTCAAGCGACTGGGAGCTGGCATGCTAGAACCGCCC TTCAAGCCTGAT |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr7 (21708648-21708785) | |
| 1-138, gnl|canFam2|chr4 (39127550-39127361) | |
| 1-138, gnl|canFam2|chr4 (39127565-39127355) | |
| 1-138, gnl|danRer3|chr23 (25870425-25870630) | |
| 1-138, gnl|danRer3|chr23 (25870420-25870621) | |
| 1-138, gnl|dasNov1|scaffold_2728 (67290-67057) | |
| 1-138, gnl|dasNov1|scaffold_35292 (5929-5746) | |
| 1-138, gnl|echTel1|scaffold_275202 (33081-32892) | |
| 1-138, gnl|echTel1|scaffold_275202 (33095-32869) | |
| 1-138, gnl|fr1|chrUn (271402192-271401902) | |
| 1-138, gnl|fr1|chrUn (271402117-271401919) | |
| 1-138, gnl|galGal2|chr13_random (19333-19522) | |
| 1-138, gnl|galGal2|chr13_random (19318-19547) | |
| 1-138, gnl|hg17|chr13 (20792037-20792226) | |
| 1-138, gnl|hg17|chr5 (176793509-176793737) | |
| 1-138, gnl|Hg17|chr5 (176793575-176793712) | |
| 1-138, gnl|loxAfr1|scaffold_11954 (19105-19294) | |
| 1-138, gnl|loxAfr1|scaffold_11954 (19109-19302) | |
| 1-138, gnl|mm7|chr13 (54532844-54533033) | |
| 1-138, gnl|mm7|chr13 (54532830-54533065) | |
| 1-138, gnl|Mm7|chr13 (54532895-54533032) | |
| 1-138, gnl|monDom2|scaffold_6 (17224688-17224877) | |
| 1-138, gnl|monDom2|scaffold_6 (17224670-17224890) | |
| 1-138, gnl|oryCun1|scaffold_109473 (5639-5416) | |
| 1-138, gnl|oryCun1|scaffold_198619 (84847-84680) | |
| 1-138, gnl|panTro1|chr14 (19940314-19940503) | |
| 1-138, gnl|panTro1|chr4 (184268570-184268798) | |
| 1-138, gnl|rheMac2|chr6 (173961330-173961514) | |
| 1-138, gnl|rheMac2|chr6 (173961315-173961543) | |
| 1-138, gnl|rn3|chr17 (15229983-15229794) | |
| 1-138, gnl|rn3|chr17 (15229997-15229762) | |
| 1-138, gnl|tetNig1|chr7 (10810097-10810365) | |
| 1-138, gnl|tetNig1|chr7 (10810091-10810307) | |
| 1-138, gnl|xenTro1|scaffold_235 (1545201-1544975) | |
| 1-138, gnl|xenTro1|scaffold_337 (841608-841794) | |
| 265-474, gnl|bosTau2|chr7 (21710676-21710885) | |
| 265-474, gnl|canFam2|chr4 (39125490-39125278) | |
| 265-474, gnl|danRer3|chr23 (25876730-25876942) | |
| 265-474, gnl|dasNov1|scaffold_2728 (60660-60456) | |
| 265-474, gnl|echTel1|scaffold_275202 (31073-30861) | |
| 265-474, gnl|fr1|chrUn (271400959-271400747) | |
| 265-474, gnl|galGal2|chr13_random (20467-20679) | |
| 265-474, gnl|hg17|chr5 (176795679-176795891) | |
| 265-474, gnl|Hg17|chr5 (176795679-176795888) | |
| 265-474, gnl|loxAfr1|scaffold_118670 (1240-1452) | |
| 265-474, gnl|mm7|chr13 (54535022-54535234) | |
| 265-474, gnl|Mm7|chr13 (54535022-54535231) | |
| 265-474, gnl|monDom2|scaffold_6 (17226691-17226903) | |
| 265-474, gnl|oryCun1|scaffold_109473 (2648-2436) | |
| 265-474, gnl|panTro1|chr4 (184270879-184271091) | |
| 265-474, gnl|rheMac2|chr6 (173963783-173963995) | |
| 265-474, gnl|rn3|chr17 (15227791-15227579) | |
| 265-474, gnl|tetNig1|chr7 (10810740-10810952) | |
| 265-474, gnl|xenTro1|scaffold_235 (1539394-1539182) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr7 (21708648-21708785) | |
| 1-138, gnl|canFam2|chr4 (39127550-39127361) | |
| 1-138, gnl|canFam2|chr4 (39127565-39127355) | |
| 1-138, gnl|danRer3|chr23 (25870425-25870630) | |
| 1-138, gnl|danRer3|chr23 (25870420-25870621) | |
| 1-138, gnl|dasNov1|scaffold_2728 (67290-67057) | |
| 1-138, gnl|dasNov1|scaffold_35292 (5929-5746) | |
| 1-138, gnl|echTel1|scaffold_275202 (33081-32892) | |
| 1-138, gnl|echTel1|scaffold_275202 (33095-32869) | |
| 1-138, gnl|fr1|chrUn (271402192-271401902) | |
| 1-138, gnl|fr1|chrUn (271402117-271401919) | |
| 1-138, gnl|galGal2|chr13_random (19333-19522) | |
| 1-138, gnl|galGal2|chr13_random (19318-19547) | |
| 1-138, gnl|hg17|chr13 (20792037-20792226) | |
| 1-138, gnl|hg17|chr5 (176793509-176793737) | |
| 1-138, gnl|Hg17|chr5 (176793575-176793712) | |
| 1-138, gnl|loxAfr1|scaffold_11954 (19105-19294) | |
| 1-138, gnl|loxAfr1|scaffold_11954 (19109-19302) | |
| 1-138, gnl|mm7|chr13 (54532844-54533033) | |
| 1-138, gnl|mm7|chr13 (54532830-54533065) | |
| 1-138, gnl|Mm7|chr13 (54532895-54533032) | |
| 1-138, gnl|monDom2|scaffold_6 (17224688-17224877) | |
| 1-138, gnl|monDom2|scaffold_6 (17224670-17224890) | |
| 1-138, gnl|oryCun1|scaffold_109473 (5639-5416) | |
| 1-138, gnl|oryCun1|scaffold_198619 (84847-84680) | |
| 1-138, gnl|panTro1|chr14 (19940314-19940503) | |
| 1-138, gnl|panTro1|chr4 (184268570-184268798) | |
| 1-138, gnl|rheMac2|chr6 (173961330-173961514) | |
| 1-138, gnl|rheMac2|chr6 (173961315-173961543) | |
| 1-138, gnl|rn3|chr17 (15229983-15229794) | |
| 1-138, gnl|rn3|chr17 (15229997-15229762) | |
| 1-138, gnl|tetNig1|chr7 (10810097-10810365) | |
| 1-138, gnl|tetNig1|chr7 (10810091-10810307) | |
| 1-138, gnl|xenTro1|scaffold_235 (1545201-1544975) | |
| 1-138, gnl|xenTro1|scaffold_337 (841608-841794) | |
| 265-474, gnl|bosTau2|chr7 (21710676-21710885) | |
| 265-474, gnl|canFam2|chr4 (39125490-39125278) | |
| 265-474, gnl|danRer3|chr23 (25876730-25876942) | |
| 265-474, gnl|dasNov1|scaffold_2728 (60660-60456) | |
| 265-474, gnl|echTel1|scaffold_275202 (31073-30861) | |
| 265-474, gnl|fr1|chrUn (271400959-271400747) | |
| 265-474, gnl|galGal2|chr13_random (20467-20679) | |
| 265-474, gnl|hg17|chr5 (176795679-176795891) | |
| 265-474, gnl|Hg17|chr5 (176795679-176795888) | |
| 265-474, gnl|loxAfr1|scaffold_118670 (1240-1452) | |
| 265-474, gnl|mm7|chr13 (54535022-54535234) | |
| 265-474, gnl|Mm7|chr13 (54535022-54535231) | |
| 265-474, gnl|monDom2|scaffold_6 (17226691-17226903) | |
| 265-474, gnl|oryCun1|scaffold_109473 (2648-2436) | |
| 265-474, gnl|panTro1|chr4 (184270879-184271091) | |
| 265-474, gnl|rheMac2|chr6 (173963783-173963995) | |
| 265-474, gnl|rn3|chr17 (15227791-15227579) | |
| 265-474, gnl|tetNig1|chr7 (10810740-10810952) | |
| 265-474, gnl|xenTro1|scaffold_235 (1539394-1539182) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| med (0.116252) |