Non-Coding RNA Search

Ss1.1-rebs26c_m22.5

Sequence:


               
               GTTTGCAGGAACATCCATCATTTCAAGGGCAGCTGGGCCAGAAGTCATCAGATCTGAGAA
GGTAGCCGTGGACTTGTCACCTGTCACTCAGCCTTTGGGGCTTCTGTTTCTCAAAGGCGT
AAAAAGCACTGTCAGCCAAGTGGCTCTCAACTAGGGGCCAGGCTGCCCATCCTAGCAGCA
CTGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGG
AGAGTCACTGCAACTGTGGGCTACCCCTGGCATTTCGTGGGCATCTCACAACGTGCAGGA
CAGTTCCAGCAGCATAGAATTGCTCCACTCAAAATGCCAATCGTAGCAACTTTGAGAAAC
CCTGAATGAGACAATCTCCTCCCCATTAAAATCTAGGAAGAGTCCCCAGAGCAGAGAGTG
TGGGCCTTTCTGGGGCCGTGGCTCCCAGAGCAAGCCAAGACAAAGACACACTGCCACCCC
GGGGGCCTGTGGGGCCAGAGCCAAGATGGTCCACATGCTGCAGGCCCAGGACATAACTAG
CTTTGCACATCTATGAGAAAAAAGGGCCATCTTTCTTTTTCTTGTTGACATTGACTTTCT
GTGCCAAGTTCTTTGAGAATAAAGATGCTAAGAACTGGAGTTCTTGTCAAAAAAAAAAAA
AAACGAAACCGACTGGTACCCATGAGGTTTCAGGTTCGATCCCTGGCCTCGTGAACTGTG
GGGTAGGTCACAGAGGCAGCTCAAAACCTGCGTTGCCGTGGCTCGGAGCAGCTCCGATTC
GACCCGTAGCCTGGGAACCTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCAGGAACATCCATCATTTCAAGGGCAGCTGGGCCAGAAGTCATCAGATCTGAGAA
GGTAGCCGTGGACTTGTCACCTGTCACTCAGCCTTTGGGGCTTCTGTTTCTCAAAGGCGT
AAAAAGCACTGTCAGCCAAGTGGCTCTCAACTAGGGGCCAGGCTGCCCATCCTAGCAGCA
CTGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGG
AGAGTCACTGCAACTGTGGGCTACCCCTGGCATTTCGTGGGCATCTCACAACGTGCAGGA
CAGTTCCAGCAGCATAGAATTGCTCCACTCAAAATGCCAATCGTAGCAACTTTGAGAAAC
CCTGAATGAGACAATCTCCTCCCCATTAAAATCTAGGAAGAGTCCCCAGAGCAGAGAGTG
TGGGCCTTTCTGGGGCCGTGGCTCCCAGAGCAAGCCAAGACAAAGACACACTGCCACCCC
GGGGGCCTGTGGGGCCAGAGCCAAGATGGTCCACATGCTGCAGGCCCAGGACATAACTAG
CTTTGCACATCTATGAGAAAAAAGGGCCATCTTTCTTTTTCTTGTTGACATTGACTTTCT
GTGCCAAGTTCTTTGAGAATAAAGATGCTAAGAACTGGAGTTCTTGTCAAAAAAAAAAAA
AAACGAAACCGACTGGTACCCATGAGGTTTCAGGTTCGATCCCTGGCCTCGTGAACTGTG
GGGTAGGTCACAGAGGCAGCTCAAAACCTGCGTTGCCGTGGCTCGGAGCAGCTCCGATTC
GACCCGTAGCCTGGGAACCTCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               218-531, - strand, RNAz p=0.997442

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-531, - strand, RNAz p=0.997442

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               218-552, gnl|bosTau2|chr2 (73090948-73090615)
               

               
               218-552, gnl|Hg17|chr2 (231737775-231738113)
               

               
               218-552, gnl|Mm7|chr1 (85954194-85954492)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-552, gnl|bosTau2|chr2 (73090948-73090615)
               

               
               218-552, gnl|Hg17|chr2 (231737775-231738113)
               

               
               218-552, gnl|Mm7|chr1 (85954194-85954492)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cli (0.305623)
               

               
               ebs (0.236602)
               

               
               cut (0.169924)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               ebs (0.236602)
               

               
               cut (0.169924)
               

               
               eje (0.0988338)

	218-552, gnl\|bosTau2\|chr2 (73090948-73090615)
	218-552, gnl\|Hg17\|chr2 (231737775-231738113)
	218-552, gnl\|Mm7\|chr1 (85954194-85954492)