Ss1.1-rebs26c_m9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGACCTCGGAGCCGGCGCGCGAGCCCGGGAATCGCGGGGAGGCGGGCTCGGGCTCCG GCTCGGGAATGCAGGCGCCGGCAGGCTGCGAGGCACCCGAGGCCGGGGCGCCGCGGGAGA GGCCGGCGCGGCTGAGCGCCCGCGAGTACTCCCGGCAGGTGCACGAGTGGCTGTGGCAGT CTTATTGCGGCTACCTCACCTGGCACAGCGGCCTGGCCGCCTTCCCCGCCTACTGCAGCC CCCAGCCGCCCGCGCCGAACTACAGCTCGGGCGCCGCCGCCGCTGCCGCCGCCGCCCCTC AGACCGCCGCGCCGCCGCCCCTCCAGCTGGGCTACTACAACCCCTTCTACTTCCTGAGCG CCGCGGCGGCCCGGCCTGAGCCGGGGGCAGCCGCCGGCGTTGCCACTCCCGCCCCGGTCG GTGGCCCGGGAGGCCGCGCCCCTCACGTGCAGCCTTCGGCCCGGGCAGCCCCAGTGGCCA GGGTAGCATCCGCCGCCGCTTCGCGAGCCCCGAGCGAGACTGGGCGGCAGGCAGGCAGAG AGTATGTTATTCCATCCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTTATTC TCTTCTTTATAAAAGCAACCATTGTCTTAACCATTATGCACCTCAGTGGAATAAAGGATA TCTCTAAGTTTGCTATGCATTATATAATAGAAGAAATAGATGAAGACACATCAATGGAAG ACTTGCAGAAAATGATGGTTGTGGCTCTTATATACAGATTATTAGTTTGTTTCTATGAGA TAATTTGCATTTGGGGAGCAGGTGGAGCTACCCCAGGGAAGTTCCTGCTAGGGCTTCGAG TTGTGACATGTGATACATCAGTGCTTATTGCACCAAGTCGGGTTTTAGTGATTCCTTCCT CAAATGTTAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGACCTCGGAGCCGGCGCGCGAGCCCGGGAATCGCGGGGAGGCGGGCTCGGGCTCCG GCTCGGGAATGCAGGCGCCGGCAGGCTGCGAGGCACCCGAGGCCGGGGCGCCGCGGGAGA GGCCGGCGCGGCTGAGCGCCCGCGAGTACTCCCGGCAGGTGCACGAGTGGCTGTGGCAGT CTTATTGCGGCTACCTCACCTGGCACAGCGGCCTGGCCGCCTTCCCCGCCTACTGCAGCC CCCAGCCGCCCGCGCCGAACTACAGCTCGGGCGCCGCCGCCGCTGCCGCCGCCGCCCCTC AGACCGCCGCGCCGCCGCCCCTCCAGCTGGGCTACTACAACCCCTTCTACTTCCTGAGCG CCGCGGCGGCCCGGCCTGAGCCGGGGGCAGCCGCCGGCGTTGCCACTCCCGCCCCGGTCG GTGGCCCGGGAGGCCGCGCCCCTCACGTGCAGCCTTCGGCCCGGGCAGCCCCAGTGGCCA GGGTAGCATCCGCCGCCGCTTCGCGAGCCCCGAGCGAGACTGGGCGGCAGGCAGGCAGAG AGTATGTTATTCCATCCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTTATTC TCTTCTTTATAAAAGCAACCATTGTCTTAACCATTATGCACCTCAGTGGAATAAAGGATA TCTCTAAGTTTGCTATGCATTATATAATAGAAGAAATAGATGAAGACACATCAATGGAAG ACTTGCAGAAAATGATGGTTGTGGCTCTTATATACAGATTATTAGTTTGTTTCTATGAGA TAATTTGCATTTGGGGAGCAGGTGGAGCTACCCCAGGGAAGTTCCTGCTAGGGCTTCGAG TTGTGACATGTGATACATCAGTGCTTATTGCACCAAGTCGGGTTTTAGTGATTCCTTCCT CAAATGTTAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 778-896, + strand, RNAz p=0.776924 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 778-896, + strand, RNAz p=0.776924 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 9-542, gnl|bosTau2|chr23 (30230099-30229561) | |
| 9-542, gnl|Hg17|chr6 (17708818-17709338) | |
| 9-542, gnl|Mm7|chr13 (46151856-46152360) | |
| 778-912, gnl|bosTau2|chr23 (30225796-30225662) | |
| 778-912, gnl|canFam2|chr35 (19529219-19529336) | |
| 778-912, gnl|canFam2|chr35 (19529224-19529329) | |
| 778-912, gnl|canFam2|chr35 (19529202-19529329) | |
| 778-912, gnl|danRer3|chr16 (28955910-28955683) | |
| 778-912, gnl|danRer3|chr16 (28955903-28955720) | |
| 778-912, gnl|danRer3|chr19 (47794027-47794158) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54388-54269) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54381-54276) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54402-54276) | |
| 778-912, gnl|echTel1|scaffold_266637 (7361-7456) | |
| 778-912, gnl|echTel1|scaffold_266637 (7359-7456) | |
| 778-912, gnl|echTel1|scaffold_266637 (7327-7456) | |
| 778-912, gnl|fr1|chrUn (65607324-65607076) | |
| 778-912, gnl|fr1|chrUn (65607317-65607142) | |
| 778-912, gnl|fr1|chrUn (65607263-65607142) | |
| 778-912, gnl|galGal2|chr2 (61785718-61785837) | |
| 778-912, gnl|galGal2|chr2 (61785725-61785830) | |
| 778-912, gnl|galGal2|chr2 (61785705-61785830) | |
| 778-912, gnl|hg17|chr2 (150003178-150003283) | |
| 778-912, gnl|hg17|chr6 (17714062-17714188) | |
| 778-912, gnl|Hg17|chr6 (17714082-17714216) | |
| 778-912, gnl|hg17|chrY (12882012-12882134) | |
| 778-912, gnl|mm7|chr13 (46156344-46156463) | |
| 778-912, gnl|mm7|chr13 (46156351-46156456) | |
| 778-912, gnl|mm7|chr13 (46156330-46156456) | |
| 778-912, gnl|Mm7|chr13 (46156350-46156484) | |
| 778-912, gnl|monDom2|scaffold_3 (106731960-106732078) | |
| 778-912, gnl|monDom2|scaffold_3 (106731966-106732071) | |
| 778-912, gnl|monDom2|scaffold_3 (106731945-106732071) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17752-17870) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17758-17863) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17738-17863) | |
| 778-912, gnl|panTro1|chr13 (39063158-39063263) | |
| 778-912, gnl|panTro1|chr5 (18086230-18086356) | |
| 778-912, gnl|panTro1|chrUn_random (61553929-61553807) | |
| 778-912, gnl|rheMac2|chr12 (12991497-12991616) | |
| 778-912, gnl|rheMac2|chr12 (12991504-12991609) | |
| 778-912, gnl|rheMac2|chr4 (17668478-17668604) | |
| 778-912, gnl|rn3|chr17 (24092857-24092738) | |
| 778-912, gnl|rn3|chr17 (24092850-24092745) | |
| 778-912, gnl|rn3|chr17 (24092871-24092745) | |
| 778-912, gnl|tetNig1|chr8 (6918192-6918441) | |
| 778-912, gnl|tetNig1|chr8 (6918199-6918375) | |
| 778-912, gnl|tetNig1|chr8 (6918256-6918375) | |
| 778-912, gnl|xenTro1|scaffold_64 (661694-661813) | |
| 778-912, gnl|xenTro1|scaffold_64 (661701-661806) | |
| 778-912, gnl|xenTro1|scaffold_64 (661691-661806) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-542, gnl|bosTau2|chr23 (30230099-30229561) | |
| 9-542, gnl|Hg17|chr6 (17708818-17709338) | |
| 9-542, gnl|Mm7|chr13 (46151856-46152360) | |
| 778-912, gnl|bosTau2|chr23 (30225796-30225662) | |
| 778-912, gnl|canFam2|chr35 (19529219-19529336) | |
| 778-912, gnl|canFam2|chr35 (19529224-19529329) | |
| 778-912, gnl|canFam2|chr35 (19529202-19529329) | |
| 778-912, gnl|danRer3|chr16 (28955910-28955683) | |
| 778-912, gnl|danRer3|chr16 (28955903-28955720) | |
| 778-912, gnl|danRer3|chr19 (47794027-47794158) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54388-54269) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54381-54276) | |
| 778-912, gnl|dasNov1|scaffold_4196 (54402-54276) | |
| 778-912, gnl|echTel1|scaffold_266637 (7361-7456) | |
| 778-912, gnl|echTel1|scaffold_266637 (7359-7456) | |
| 778-912, gnl|echTel1|scaffold_266637 (7327-7456) | |
| 778-912, gnl|fr1|chrUn (65607324-65607076) | |
| 778-912, gnl|fr1|chrUn (65607317-65607142) | |
| 778-912, gnl|fr1|chrUn (65607263-65607142) | |
| 778-912, gnl|galGal2|chr2 (61785718-61785837) | |
| 778-912, gnl|galGal2|chr2 (61785725-61785830) | |
| 778-912, gnl|galGal2|chr2 (61785705-61785830) | |
| 778-912, gnl|hg17|chr2 (150003178-150003283) | |
| 778-912, gnl|hg17|chr6 (17714062-17714188) | |
| 778-912, gnl|Hg17|chr6 (17714082-17714216) | |
| 778-912, gnl|hg17|chrY (12882012-12882134) | |
| 778-912, gnl|mm7|chr13 (46156344-46156463) | |
| 778-912, gnl|mm7|chr13 (46156351-46156456) | |
| 778-912, gnl|mm7|chr13 (46156330-46156456) | |
| 778-912, gnl|Mm7|chr13 (46156350-46156484) | |
| 778-912, gnl|monDom2|scaffold_3 (106731960-106732078) | |
| 778-912, gnl|monDom2|scaffold_3 (106731966-106732071) | |
| 778-912, gnl|monDom2|scaffold_3 (106731945-106732071) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17752-17870) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17758-17863) | |
| 778-912, gnl|oryCun1|scaffold_145156 (17738-17863) | |
| 778-912, gnl|panTro1|chr13 (39063158-39063263) | |
| 778-912, gnl|panTro1|chr5 (18086230-18086356) | |
| 778-912, gnl|panTro1|chrUn_random (61553929-61553807) | |
| 778-912, gnl|rheMac2|chr12 (12991497-12991616) | |
| 778-912, gnl|rheMac2|chr12 (12991504-12991609) | |
| 778-912, gnl|rheMac2|chr4 (17668478-17668604) | |
| 778-912, gnl|rn3|chr17 (24092857-24092738) | |
| 778-912, gnl|rn3|chr17 (24092850-24092745) | |
| 778-912, gnl|rn3|chr17 (24092871-24092745) | |
| 778-912, gnl|tetNig1|chr8 (6918192-6918441) | |
| 778-912, gnl|tetNig1|chr8 (6918199-6918375) | |
| 778-912, gnl|tetNig1|chr8 (6918256-6918375) | |
| 778-912, gnl|xenTro1|scaffold_64 (661694-661813) | |
| 778-912, gnl|xenTro1|scaffold_64 (661701-661806) | |
| 778-912, gnl|xenTro1|scaffold_64 (661691-661806) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| pla (0.133672) | |
| ebs (0.118301) |