Non-Coding RNA Search

Ss1.1-rebs27c_c2.5

Sequence:


               
               AGTGGCAACGGGTCCAAGCCGGAGGAAGTAAGACTCCCCTGGGGCGTGGTCGCTTGTGAT
CCTTGCACCTGTCACTTTGGGTCACAGCTCCGGTCTTGTCCCGCAGACCCTCAGAAGACC
CGGCCGCTGAGCAACTATGAACTTAGAGCGAGTGTCCAACGAGGAGAAGTTGAACCTGTG
CCGGAAGTACTACCTGGGTGGGTTTGCTTTCCTACCTTTTCTTTGGTTGGTCAACATCTT
CTGGTTCTTCCGAGAGGCCTTCCTTGTCCCGGCATACACGGAACAGAGCCAAATCAAAGG
CTATGTCTGGCGCTCAGCTGTGGGCTTCCTCTTTTGGGTGATTATACTCACTACCTGGAT
CACTATCTTCCAGATCTACCGGCCACGTTGGGGTGCCCTTGGGGATTACCTCTCCTTCAC
CATACCCCTGGGTACCCCCTGACAACTTCTTGTGCACAAGCCTGAGGACCAGGATGGGCT
CCTCTACTCCAAGCCCCTCTCAAGTCCCTAAGACTTTTTCCTATCTCCTGTGTTCTCTGC
TGGCATTCCCCAATAAAGGACCCTAATTCTCAATATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGAGTATTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGCAACGGGTCCAAGCCGGAGGAAGTAAGACTCCCCTGGGGCGTGGTCGCTTGTGAT
CCTTGCACCTGTCACTTTGGGTCACAGCTCCGGTCTTGTCCCGCAGACCCTCAGAAGACC
CGGCCGCTGAGCAACTATGAACTTAGAGCGAGTGTCCAACGAGGAGAAGTTGAACCTGTG
CCGGAAGTACTACCTGGGTGGGTTTGCTTTCCTACCTTTTCTTTGGTTGGTCAACATCTT
CTGGTTCTTCCGAGAGGCCTTCCTTGTCCCGGCATACACGGAACAGAGCCAAATCAAAGG
CTATGTCTGGCGCTCAGCTGTGGGCTTCCTCTTTTGGGTGATTATACTCACTACCTGGAT
CACTATCTTCCAGATCTACCGGCCACGTTGGGGTGCCCTTGGGGATTACCTCTCCTTCAC
CATACCCCTGGGTACCCCCTGACAACTTCTTGTGCACAAGCCTGAGGACCAGGATGGGCT
CCTCTACTCCAAGCCCCTCTCAAGTCCCTAAGACTTTTTCCTATCTCCTGTGTTCTCTGC
TGGCATTCCCCAATAAAGGACCCTAATTCTCAATATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGAGTATTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57036628|ref|XP_533689.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57036628|ref|XP_533689.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-486, + strand, RNAz p=0.991769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-486, + strand, RNAz p=0.991769

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_172341, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_172341, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-199, gnl|bosTau2|chr18 (36892615-36892770)
               

               
               41-199, gnl|Hg17|chr19 (40928575-40928734)
               

               
               41-199, gnl|Mm7|chr7 (27504162-27504017)
               


               
               303-576, gnl|bosTau2|chr18 (36893477-36893748)
               

               
               303-576, gnl|Hg17|chr19 (40929449-40929748)
               

               
               303-576, gnl|Mm7|chr7 (27503357-27503085)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-199, gnl|bosTau2|chr18 (36892615-36892770)
               

               
               41-199, gnl|Hg17|chr19 (40928575-40928734)
               

               
               41-199, gnl|Mm7|chr7 (27504162-27504017)
               


               
               303-576, gnl|bosTau2|chr18 (36893477-36893748)
               

               
               303-576, gnl|Hg17|chr19 (40929449-40929748)
               

               
               303-576, gnl|Mm7|chr7 (27503357-27503085)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               duo (0.691204)
               

               
               cov (0.660764)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               nep (0.36785)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.691204)
               

               
               cov (0.660764)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               nep (0.36785)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	41-199, gnl\|bosTau2\|chr18 (36892615-36892770)
	41-199, gnl\|Hg17\|chr19 (40928575-40928734)
	41-199, gnl\|Mm7\|chr7 (27504162-27504017)

	303-576, gnl\|bosTau2\|chr18 (36893477-36893748)
	303-576, gnl\|Hg17\|chr19 (40929449-40929748)
	303-576, gnl\|Mm7\|chr7 (27503357-27503085)

	duo (0.691204)
	cov (0.660764)
	nco (0.485201)
	cly (0.482567)
	ece (0.45861)
	amn (0.417711)
	nep (0.36785)
	fhi (0.339155)
	hyp (0.285673)
	ute (0.265569)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	ebs (0.236602)
	ecc (0.23007)
	nlu (0.191681)
	ill (0.175593)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	hlv (0.139256)
	nca (0.136874)
	nmm (0.132802)
	sug (0.127291)
	jca (0.11396)
	eje (0.0988338)