Ss1.1-rebs27c_e6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCCCAGGGTCCGCCGGCCGGGCCGAGGGCGCCAGAGGGGGGCCATGTCGTACCAGGC AAGAAGAGCATCCCCCACATCACGAGTGACCGACTCCTCATCAAGGGTGGACGAATCATC AATGATGACCAGTCCTTCTACGCCGACGTCTACCTGGAAGACGGACTCATAAAACAAATA GGAGAGAACCTCATTGTTCCCGGCGGAGTGAAGACCGTTGAGGCCAATGGGCGGATGGTT ATTCCCGGAGGTATTGATGTCAACACGTACCTGCAGAAGCCATCCCAGGGGATGACGGCC GCTGATGACTTCTTCCAAGGGACCAAGGCAGCGCTGGTGGGCGGGACCACGATGATCATT GACCATGTTGTCCCTGAACCTGGGTCCAGCCTGCTGACCTCCTTCGAGAAATGGCATGAA GCAGCTGACACCAAATCCTGCTGTGACTACTCCCTCCACGTGGACATCACCAGCTGGTAC GATGGCGTCCGGGAGGAGCTCGAGGTGCTGGTGCAGGACAAAGGTGTCAATTCCTTCCAA GTCTACATGGCCTATAAGGATCTCTACCAAATGTCAGATAGCCAGCTCTATGAAGCTTTC ACCTTCCTTAAGGGACTGGGAGCGGTGATCTTGGTCCACGCAGAGAATGGAGATTTGATA GCTCAGGAACAAAAGCGGATCTTAGAGATGGGCATCACCGGTCCTGAGGGCCACGCTCTG AGCAGACCTGAAGAGCTGGAGGCCGAGGCCGTGTTCCGGGCCATCACCATCGCGGGCCGG ATCAACTGCCCCGTGTACATCACCAAGGTGATGAGCAAGAGCGCGGCGGACATCATCACG CTGGCCAGGAAGAAAGGCCCCCTCGTCTTTGGCGAGCCCATCGCTGCCAGCCTGGGATCG GACGGCACCCATTACTGGAGCAAGAACTGGGCCAAGGCGGCAGCCTTCGTGACCTCCCCT CCCCTGAGCCCGGACCCCACCACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCCCAGGGTCCGCCGGCCGGGCCGAGGGCGCCAGAGGGGGGCCATGTCGTACCAGGC AAGAAGAGCATCCCCCACATCACGAGTGACCGACTCCTCATCAAGGGTGGACGAATCATC AATGATGACCAGTCCTTCTACGCCGACGTCTACCTGGAAGACGGACTCATAAAACAAATA GGAGAGAACCTCATTGTTCCCGGCGGAGTGAAGACCGTTGAGGCCAATGGGCGGATGGTT ATTCCCGGAGGTATTGATGTCAACACGTACCTGCAGAAGCCATCCCAGGGGATGACGGCC GCTGATGACTTCTTCCAAGGGACCAAGGCAGCGCTGGTGGGCGGGACCACGATGATCATT GACCATGTTGTCCCTGAACCTGGGTCCAGCCTGCTGACCTCCTTCGAGAAATGGCATGAA GCAGCTGACACCAAATCCTGCTGTGACTACTCCCTCCACGTGGACATCACCAGCTGGTAC GATGGCGTCCGGGAGGAGCTCGAGGTGCTGGTGCAGGACAAAGGTGTCAATTCCTTCCAA GTCTACATGGCCTATAAGGATCTCTACCAAATGTCAGATAGCCAGCTCTATGAAGCTTTC ACCTTCCTTAAGGGACTGGGAGCGGTGATCTTGGTCCACGCAGAGAATGGAGATTTGATA GCTCAGGAACAAAAGCGGATCTTAGAGATGGGCATCACCGGTCCTGAGGGCCACGCTCTG AGCAGACCTGAAGAGCTGGAGGCCGAGGCCGTGTTCCGGGCCATCACCATCGCGGGCCGG ATCAACTGCCCCGTGTACATCACCAAGGTGATGAGCAAGAGCGCGGCGGACATCATCACG CTGGCCAGGAAGAAAGGCCCCCTCGTCTTTGGCGAGCCCATCGCTGCCAGCCTGGGATCG GACGGCACCCATTACTGGAGCAAGAACTGGGCCAAGGCGGCAGCCTTCGTGACCTCCCCT CCCCTGAGCCCGGACCCCACCACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 166-285, + strand, RNAz p=0.619929 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 166-285, + strand, RNAz p=0.619929 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 166-358, gnl|bosTau2|chr7 (40051487-40051295) | |
| 166-358, gnl|canFam2|chr2 (44565018-44565213) | |
| 166-358, gnl|danRer3|chr21 (39884223-39884032) | |
| 166-358, gnl|dasNov1|scaffold_862 (125893-126088) | |
| 166-358, gnl|echTel1|scaffold_46735 (1995-1800) | |
| 166-358, gnl|fr1|chrUn (144430483-144430675) | |
| 166-358, gnl|galGal2|chr13 (17024797-17024991) | |
| 166-358, gnl|hg17|chr5 (146778197-146778392) | |
| 166-358, gnl|Hg17|chr5 (146778395-146778203) | |
| 166-358, gnl|loxAfr1|scaffold_68238 (331-526) | |
| 166-358, gnl|mm7|chr18 (43738227-43738422) | |
| 166-358, gnl|Mm7|chr18 (43738425-43738233) | |
| 166-358, gnl|monDom2|scaffold_6 (58784489-58784294) | |
| 166-358, gnl|oryCun1|scaffold_192963 (11496-11689) | |
| 166-358, gnl|panTro1|chr4 (153630709-153630904) | |
| 166-358, gnl|rheMac2|chr6 (143876639-143876834) | |
| 166-358, gnl|rn3|chr18 (36684510-36684705) | |
| 166-358, gnl|tetNig1|chrUn_random (109583461-109583653) | |
| 166-358, gnl|xenTro1|scaffold_21 (343801-343996) | |
| 359-526, gnl|bosTau2|chr7 (40048703-40048536) | |
| 359-526, gnl|Hg17|chr5 (146775629-146775462) | |
| 359-526, gnl|Mm7|chr18 (43735669-43735502) | |
| 734-857, gnl|bosTau2|chr7 (40034754-40034631) | |
| 734-857, gnl|canFam2|chr2 (44552033-44552163) | |
| 734-857, gnl|danRer3|chr21 (39894439-39894315) | |
| 734-857, gnl|dasNov1|scaffold_862 (112022-112152) | |
| 734-857, gnl|echTel1|scaffold_281866 (11981-12111) | |
| 734-857, gnl|fr1|chrUn (144424948-144425078) | |
| 734-857, gnl|galGal2|chr13 (17018131-17018260) | |
| 734-857, gnl|hg17|chr5 (146765364-146765494) | |
| 734-857, gnl|Hg17|chr5 (146765488-146765365) | |
| 734-857, gnl|loxAfr1|scaffold_682 (91250-91383) | |
| 734-857, gnl|mm7|chr18 (43719511-43719641) | |
| 734-857, gnl|Mm7|chr18 (43719635-43719512) | |
| 734-857, gnl|monDom2|scaffold_6 (58801231-58801101) | |
| 734-857, gnl|oryCun1|scaffold_127522 (4494-4623) | |
| 734-857, gnl|panTro1|chr4 (153617884-153618014) | |
| 734-857, gnl|rheMac2|chr6 (143863170-143863300) | |
| 734-857, gnl|rn3|chr18 (36666914-36667044) | |
| 734-857, gnl|tetNig1|chr4 (5983871-5984001) | |
| 734-857, gnl|xenTro1|scaffold_21 (331504-331634) | |
| 865-983, gnl|bosTau2|chr7 (40030767-40030649) | |
| 865-983, gnl|canFam2|chr2 (44547713-44547891) | |
| 865-983, gnl|canFam2|chr28 (43172652-43172833) | |
| 865-983, gnl|danRer3|chr14 (36134583-36134766) | |
| 865-983, gnl|danRer3|chr21 (39898635-39898471) | |
| 865-983, gnl|dasNov1|scaffold_211426 (440-639) | |
| 865-983, gnl|dasNov1|scaffold_862 (107865-108042) | |
| 865-983, gnl|echTel1|scaffold_107896 (25-205) | |
| 865-983, gnl|echTel1|scaffold_281866 (6477-6654) | |
| 865-983, gnl|fr1|chrUn (144424389-144424217) | |
| 865-983, gnl|fr1|chrUn (144424220-144424400) | |
| 865-983, gnl|galGal2|chr13 (17017323-17017502) | |
| 865-983, gnl|galGal2|chr6 (33414744-33414930) | |
| 865-983, gnl|hg17|chr10 (133863824-133864012) | |
| 865-983, gnl|hg17|chr5 (146761295-146761474) | |
| 865-983, gnl|Hg17|chr5 (146761444-146761326) | |
| 865-983, gnl|loxAfr1|scaffold_682 (87332-87171) | |
| 865-983, gnl|loxAfr1|scaffold_682 (87171-87348) | |
| 865-983, gnl|mm7|chr18 (43711151-43711328) | |
| 865-983, gnl|Mm7|chr18 (43711300-43711182) | |
| 865-983, gnl|mm7|chr7 (135515792-135515981) | |
| 865-983, gnl|monDom2|scaffold_6 (58805698-58805519) | |
| 865-983, gnl|monDom2|scaffold_648 (9423-9596) | |
| 865-983, gnl|oryCun1|scaffold_213870 (163058-162894) | |
| 865-983, gnl|oryCun1|scaffold_213870 (162897-163074) | |
| 865-983, gnl|panTro1|chr4 (153614136-153614315) | |
| 865-983, gnl|panTro1|chr8 (136636909-136637097) | |
| 865-983, gnl|rheMac2|chr5 (2967136-2967309) | |
| 865-983, gnl|rheMac2|chr6 (143859304-143859483) | |
| 865-983, gnl|rn3|chr1 (199026095-199026284) | |
| 865-983, gnl|rn3|chr18 (36664272-36664449) | |
| 865-983, gnl|tetNig1|chr4 (5983784-5983600) | |
| 865-983, gnl|tetNig1|chr4 (5983603-5983776) | |
| 865-983, gnl|xenTro1|scaffold_21 (330753-330917) | |
| 865-983, gnl|xenTro1|scaffold_97 (834462-834634) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-358, gnl|bosTau2|chr7 (40051487-40051295) | |
| 166-358, gnl|canFam2|chr2 (44565018-44565213) | |
| 166-358, gnl|danRer3|chr21 (39884223-39884032) | |
| 166-358, gnl|dasNov1|scaffold_862 (125893-126088) | |
| 166-358, gnl|echTel1|scaffold_46735 (1995-1800) | |
| 166-358, gnl|fr1|chrUn (144430483-144430675) | |
| 166-358, gnl|galGal2|chr13 (17024797-17024991) | |
| 166-358, gnl|hg17|chr5 (146778197-146778392) | |
| 166-358, gnl|Hg17|chr5 (146778395-146778203) | |
| 166-358, gnl|loxAfr1|scaffold_68238 (331-526) | |
| 166-358, gnl|mm7|chr18 (43738227-43738422) | |
| 166-358, gnl|Mm7|chr18 (43738425-43738233) | |
| 166-358, gnl|monDom2|scaffold_6 (58784489-58784294) | |
| 166-358, gnl|oryCun1|scaffold_192963 (11496-11689) | |
| 166-358, gnl|panTro1|chr4 (153630709-153630904) | |
| 166-358, gnl|rheMac2|chr6 (143876639-143876834) | |
| 166-358, gnl|rn3|chr18 (36684510-36684705) | |
| 166-358, gnl|tetNig1|chrUn_random (109583461-109583653) | |
| 166-358, gnl|xenTro1|scaffold_21 (343801-343996) | |
| 359-526, gnl|bosTau2|chr7 (40048703-40048536) | |
| 359-526, gnl|Hg17|chr5 (146775629-146775462) | |
| 359-526, gnl|Mm7|chr18 (43735669-43735502) | |
| 734-857, gnl|bosTau2|chr7 (40034754-40034631) | |
| 734-857, gnl|canFam2|chr2 (44552033-44552163) | |
| 734-857, gnl|danRer3|chr21 (39894439-39894315) | |
| 734-857, gnl|dasNov1|scaffold_862 (112022-112152) | |
| 734-857, gnl|echTel1|scaffold_281866 (11981-12111) | |
| 734-857, gnl|fr1|chrUn (144424948-144425078) | |
| 734-857, gnl|galGal2|chr13 (17018131-17018260) | |
| 734-857, gnl|hg17|chr5 (146765364-146765494) | |
| 734-857, gnl|Hg17|chr5 (146765488-146765365) | |
| 734-857, gnl|loxAfr1|scaffold_682 (91250-91383) | |
| 734-857, gnl|mm7|chr18 (43719511-43719641) | |
| 734-857, gnl|Mm7|chr18 (43719635-43719512) | |
| 734-857, gnl|monDom2|scaffold_6 (58801231-58801101) | |
| 734-857, gnl|oryCun1|scaffold_127522 (4494-4623) | |
| 734-857, gnl|panTro1|chr4 (153617884-153618014) | |
| 734-857, gnl|rheMac2|chr6 (143863170-143863300) | |
| 734-857, gnl|rn3|chr18 (36666914-36667044) | |
| 734-857, gnl|tetNig1|chr4 (5983871-5984001) | |
| 734-857, gnl|xenTro1|scaffold_21 (331504-331634) | |
| 865-983, gnl|bosTau2|chr7 (40030767-40030649) | |
| 865-983, gnl|canFam2|chr2 (44547713-44547891) | |
| 865-983, gnl|canFam2|chr28 (43172652-43172833) | |
| 865-983, gnl|danRer3|chr14 (36134583-36134766) | |
| 865-983, gnl|danRer3|chr21 (39898635-39898471) | |
| 865-983, gnl|dasNov1|scaffold_211426 (440-639) | |
| 865-983, gnl|dasNov1|scaffold_862 (107865-108042) | |
| 865-983, gnl|echTel1|scaffold_107896 (25-205) | |
| 865-983, gnl|echTel1|scaffold_281866 (6477-6654) | |
| 865-983, gnl|fr1|chrUn (144424389-144424217) | |
| 865-983, gnl|fr1|chrUn (144424220-144424400) | |
| 865-983, gnl|galGal2|chr13 (17017323-17017502) | |
| 865-983, gnl|galGal2|chr6 (33414744-33414930) | |
| 865-983, gnl|hg17|chr10 (133863824-133864012) | |
| 865-983, gnl|hg17|chr5 (146761295-146761474) | |
| 865-983, gnl|Hg17|chr5 (146761444-146761326) | |
| 865-983, gnl|loxAfr1|scaffold_682 (87332-87171) | |
| 865-983, gnl|loxAfr1|scaffold_682 (87171-87348) | |
| 865-983, gnl|mm7|chr18 (43711151-43711328) | |
| 865-983, gnl|Mm7|chr18 (43711300-43711182) | |
| 865-983, gnl|mm7|chr7 (135515792-135515981) | |
| 865-983, gnl|monDom2|scaffold_6 (58805698-58805519) | |
| 865-983, gnl|monDom2|scaffold_648 (9423-9596) | |
| 865-983, gnl|oryCun1|scaffold_213870 (163058-162894) | |
| 865-983, gnl|oryCun1|scaffold_213870 (162897-163074) | |
| 865-983, gnl|panTro1|chr4 (153614136-153614315) | |
| 865-983, gnl|panTro1|chr8 (136636909-136637097) | |
| 865-983, gnl|rheMac2|chr5 (2967136-2967309) | |
| 865-983, gnl|rheMac2|chr6 (143859304-143859483) | |
| 865-983, gnl|rn3|chr1 (199026095-199026284) | |
| 865-983, gnl|rn3|chr18 (36664272-36664449) | |
| 865-983, gnl|tetNig1|chr4 (5983784-5983600) | |
| 865-983, gnl|tetNig1|chr4 (5983603-5983776) | |
| 865-983, gnl|xenTro1|scaffold_21 (330753-330917) | |
| 865-983, gnl|xenTro1|scaffold_97 (834462-834634) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) |