Non-Coding RNA Search

Ss1.1-rebs27c_e9.5

Sequence:


               
               TCTCCATCTCACTAACTCTAGAACTCTTCTAGTTAGAGGAGCTCTTATCCCATATCTGGC
TTAGGTCTGAAGCCTGCAGAAGGACGGTGGCGGGGAGCTGACAGCTGGGGAAGTGGGGAG
GGGACAGAGGCCTGTGGGAGGGCTCTGTGGCCTTGTGGGACCAGAAGAAAGTTTTCTGTG
CTCTCCTTTAGCACCGGCCAGGTTGCCCGGGTCTTTTCTCCTTCAAAGGACCTTGGGGTC
CCAGCCCCTCACCTTGCCCTTCCGAGCTCTTCCTCTGTGGCTGTGGATTCTGGCCTGTGG
GTGCAGAGCTGTCGATCCACCAATGCTGCAGCATTACACGTACATTGTAACACGTCTGTG
TCCACTGAGACCTTCACGACCTGGCTGAGCGCGTGTATCCCCGTGGGTGTGCATGTGTGT
ACAATGTAGTGCATAGTTGACAATGTATGTATATATAAGCTGACGTATTTATTTGTGAGT
GCAGAAGTAGTGCCTGTGGCAGTTTTCTGTATTTGGAACTCATTGAACCAAATCAGTTTA
ATTTCAAAGAAAGGGAAAGGGGGGTGTGGGGGAAAGCGTGGGGAGAAGGATTCTTAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCATCTCACTAACTCTAGAACTCTTCTAGTTAGAGGAGCTCTTATCCCATATCTGGC
TTAGGTCTGAAGCCTGCAGAAGGACGGTGGCGGGGAGCTGACAGCTGGGGAAGTGGGGAG
GGGACAGAGGCCTGTGGGAGGGCTCTGTGGCCTTGTGGGACCAGAAGAAAGTTTTCTGTG
CTCTCCTTTAGCACCGGCCAGGTTGCCCGGGTCTTTTCTCCTTCAAAGGACCTTGGGGTC
CCAGCCCCTCACCTTGCCCTTCCGAGCTCTTCCTCTGTGGCTGTGGATTCTGGCCTGTGG
GTGCAGAGCTGTCGATCCACCAATGCTGCAGCATTACACGTACATTGTAACACGTCTGTG
TCCACTGAGACCTTCACGACCTGGCTGAGCGCGTGTATCCCCGTGGGTGTGCATGTGTGT
ACAATGTAGTGCATAGTTGACAATGTATGTATATATAAGCTGACGTATTTATTTGTGAGT
GCAGAAGTAGTGCCTGTGGCAGTTTTCTGTATTTGGAACTCATTGAACCAAATCAGTTTA
ATTTCAAAGAAAGGGAAAGGGGGGTGTGGGGGAAAGCGTGGGGAGAAGGATTCTTAGCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               142-258, + strand, RNAz p=0.999125

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-258, + strand, RNAz p=0.999125

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-600, gnl|bosTau2|chr11 (53897664-53898249)
               

               
               1-600, gnl|Hg17|chr2 (25292974-25293572)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr11 (53897664-53898249)
               

               
               1-600, gnl|Hg17|chr2 (25292974-25293572)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               spc (0.113366)

	1-600, gnl\|bosTau2\|chr11 (53897664-53898249)
	1-600, gnl\|Hg17\|chr2 (25292974-25293572)