Non-Coding RNA Search

Ss1.1-rebs27c_f18.5

Sequence:


               
               AAAACTCTTTGCATAGGGTCCGAGATCTCACCGTTAGAAGATGGAGGGGCAGGTTGCTTT
CCTCTGAAGGCTTTGGGGTCTTCCAGCCCCAAGGCCTAAATCAAACAACAGCAGAAAATC
CCCAGGTCTTTCCCAAGTTCCAAAGCAAGCCCTCCTCGTTTGGATGTAAAGATCCGGTTC
ACCCAAGTTGGGGGGAGGGAGATCCCAGGCTCTGGGCATCAGCCATCGCCCCCTCCACCA
ACAACAAGATGTTTAAGGCTGCTTTGGAACCACCCTTCTCAGCCCCCTGAGTCTGTTTTG
TAATGCCTGTGGTGCTCTCCCTCTGGACCTTTCCTCTCGGGGGTCTGTCGCCACACTTTG
CTAACTCTTGTGTGCACATATTTTATAACAGAGTAGCGAGGACATGGTGCCGCCTTCAGC
TTCCACAAGCTGCCCGGGCTCTGGGGGGCTCTGGGACAATGGGGCTGGGAAGTGACTGTG
CTCTTATTGTACACTCTTGATTTCTCTGTATCTCTGGCTTGTGCTCTTTGTAATCAATGG
GATTTGTCTGCCTTTTCAACACTATACTGAGCAATAACAATAAATGCACACGTGGAAATG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACTCTTTGCATAGGGTCCGAGATCTCACCGTTAGAAGATGGAGGGGCAGGTTGCTTT
CCTCTGAAGGCTTTGGGGTCTTCCAGCCCCAAGGCCTAAATCAAACAACAGCAGAAAATC
CCCAGGTCTTTCCCAAGTTCCAAAGCAAGCCCTCCTCGTTTGGATGTAAAGATCCGGTTC
ACCCAAGTTGGGGGGAGGGAGATCCCAGGCTCTGGGCATCAGCCATCGCCCCCTCCACCA
ACAACAAGATGTTTAAGGCTGCTTTGGAACCACCCTTCTCAGCCCCCTGAGTCTGTTTTG
TAATGCCTGTGGTGCTCTCCCTCTGGACCTTTCCTCTCGGGGGTCTGTCGCCACACTTTG
CTAACTCTTGTGTGCACATATTTTATAACAGAGTAGCGAGGACATGGTGCCGCCTTCAGC
TTCCACAAGCTGCCCGGGCTCTGGGGGGCTCTGGGACAATGGGGCTGGGAAGTGACTGTG
CTCTTATTGTACACTCTTGATTTCTCTGTATCTCTGGCTTGTGCTCTTTGTAATCAATGG
GATTTGTCTGCCTTTTCAACACTATACTGAGCAATAACAATAAATGCACACGTGGAAATG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               159-433, - strand, RNAz p=0.957565
               

               
               330-428, - strand, RNAz p=0.974359
               

               
               473-592, + strand, RNAz p=0.509513

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-433, - strand, RNAz p=0.957565
               

               
               330-428, - strand, RNAz p=0.974359
               

               
               473-592, + strand, RNAz p=0.509513

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               39-600, gnl|bosTau2|chr22 (44535908-44535348)
               

               
               39-600, gnl|canFam2|chr20 (11042407-11041620)
               

               
               39-600, gnl|echTel1|scaffold_241460 (720-1457)
               

               
               39-600, gnl|hg17|chr3 (10340572-10341378)
               

               
               39-600, gnl|Hg17|chr3 (10341252-10340709)
               

               
               39-600, gnl|mm7|chr6 (113904669-113905393)
               

               
               39-600, gnl|Mm7|chr6 (113905287-113904774)
               

               
               39-600, gnl|monDom2|scaffold_5 (37858494-37857695)
               

               
               39-600, gnl|oryCun1|scaffold_212298 (53874-54415)
               

               
               39-600, gnl|panTro1|chr2 (10735459-10736265)
               

               
               39-600, gnl|rheMac2|chr2 (50701949-50701145)
               

               
               39-600, gnl|rn3|chr4 (149898655-149899381)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-600, gnl|bosTau2|chr22 (44535908-44535348)
               

               
               39-600, gnl|canFam2|chr20 (11042407-11041620)
               

               
               39-600, gnl|echTel1|scaffold_241460 (720-1457)
               

               
               39-600, gnl|hg17|chr3 (10340572-10341378)
               

               
               39-600, gnl|Hg17|chr3 (10341252-10340709)
               

               
               39-600, gnl|mm7|chr6 (113904669-113905393)
               

               
               39-600, gnl|Mm7|chr6 (113905287-113904774)
               

               
               39-600, gnl|monDom2|scaffold_5 (37858494-37857695)
               

               
               39-600, gnl|oryCun1|scaffold_212298 (53874-54415)
               

               
               39-600, gnl|panTro1|chr2 (10735459-10736265)
               

               
               39-600, gnl|rheMac2|chr2 (50701949-50701145)
               

               
               39-600, gnl|rn3|chr4 (149898655-149899381)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	159-433, - strand, RNAz p=0.957565
	330-428, - strand, RNAz p=0.974359
	473-592, + strand, RNAz p=0.509513

	39-600, gnl\|bosTau2\|chr22 (44535908-44535348)
	39-600, gnl\|canFam2\|chr20 (11042407-11041620)
	39-600, gnl\|echTel1\|scaffold_241460 (720-1457)
	39-600, gnl\|hg17\|chr3 (10340572-10341378)
	39-600, gnl\|Hg17\|chr3 (10341252-10340709)
	39-600, gnl\|mm7\|chr6 (113904669-113905393)
	39-600, gnl\|Mm7\|chr6 (113905287-113904774)
	39-600, gnl\|monDom2\|scaffold_5 (37858494-37857695)
	39-600, gnl\|oryCun1\|scaffold_212298 (53874-54415)
	39-600, gnl\|panTro1\|chr2 (10735459-10736265)
	39-600, gnl\|rheMac2\|chr2 (50701949-50701145)
	39-600, gnl\|rn3\|chr4 (149898655-149899381)

	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	ebs (0.118301)
	jca (0.11396)