Ss1.1-rebs27c_k7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCTCAAGGACTTCACCTCCGAGCAGATCGATGAGATCCTGCAGAACCACACAGAGATT GTCTTCGCCCGCACTTCCCCCCAGCAGAAGCTCATCATTGTGGAGGGCTGTCAGAGACGG GGAGCCATCGTGGCTGTGACTGGGGATGGTGTGAATGACTCCCCTGCTCTGAAAAAGGCT GATATCGGGGTGGCCATGGGCATTGCCGGCTCTGACGTCTCCAAACAGGCCGCGGACATG ATCCTGCTGGATGACAACTTTGCTTCCATCGTCACGGGTGTGGAGGAGGGCCGCCTGATC TTCGACAACCTAAAGAAATCCATTGCCTACACCCTGACCAGCAACATCCCCGAGATCACG CCCTTCCTGCTGTTCATCATGGCCAACATCCCGCTGCCTCTGGGTACCATCACCATCCTC TGCATTGACCTGGGCACCGACATGGTGCCCGCCATCTCGTTGGCCTATGAGGCTGCTGAG AGTGACATCATGAAGAGACAGCCCAGGAACCCACGCACTGACAAGCTGGTCAATGAGAGG CTCATCAGCATGGCCTATGGGCAGATCGGAATGATCCAGGCTCTTGGTGGCTTCTTCTCC TACTTTGTGATCCTGGCAGAAAACGGCTTCTTGCCCAGCAACCTAGTCGGCATCAGGCTA AACTGGGACGACCGCACCGTCAATGACCTGGAGGACAGTTACGGGCAGCAGTGGACATAT GAGCAGAGGAAAGTAGTGGAGTTCACATGCCACACGGCCTTCTTCGTGAGCATAGTGGTT GTGCAGTGGGCAGACCTGATCATCTGCAAGACCCGGAGGAACTCCGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCTCAAGGACTTCACCTCCGAGCAGATCGATGAGATCCTGCAGAACCACACAGAGATT GTCTTCGCCCGCACTTCCCCCCAGCAGAAGCTCATCATTGTGGAGGGCTGTCAGAGACGG GGAGCCATCGTGGCTGTGACTGGGGATGGTGTGAATGACTCCCCTGCTCTGAAAAAGGCT GATATCGGGGTGGCCATGGGCATTGCCGGCTCTGACGTCTCCAAACAGGCCGCGGACATG ATCCTGCTGGATGACAACTTTGCTTCCATCGTCACGGGTGTGGAGGAGGGCCGCCTGATC TTCGACAACCTAAAGAAATCCATTGCCTACACCCTGACCAGCAACATCCCCGAGATCACG CCCTTCCTGCTGTTCATCATGGCCAACATCCCGCTGCCTCTGGGTACCATCACCATCCTC TGCATTGACCTGGGCACCGACATGGTGCCCGCCATCTCGTTGGCCTATGAGGCTGCTGAG AGTGACATCATGAAGAGACAGCCCAGGAACCCACGCACTGACAAGCTGGTCAATGAGAGG CTCATCAGCATGGCCTATGGGCAGATCGGAATGATCCAGGCTCTTGGTGGCTTCTTCTCC TACTTTGTGATCCTGGCAGAAAACGGCTTCTTGCCCAGCAACCTAGTCGGCATCAGGCTA AACTGGGACGACCGCACCGTCAATGACCTGGAGGACAGTTACGGGCAGCAGTGGACATAT GAGCAGAGGAAAGTAGTGGAGTTCACATGCCACACGGCCTTCTTCGTGAGCATAGTGGTT GTGCAGTGGGCAGACCTGATCATCTGCAAGACCCGGAGGAACTCCGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr18 (44718839-44718719) | |
| 1-121, gnl|canFam2|chr1 (115240138-115240032) | |
| 1-121, gnl|danRer3|chr19 (1737084-1737176) | |
| 1-121, gnl|dasNov1|scaffold_22945 (20884-20972) | |
| 1-121, gnl|echTel1|scaffold_290394 (49313-49225) | |
| 1-121, gnl|fr1|chrUn (100140686-100140599) | |
| 1-121, gnl|galGal2|chr1 (74373921-74374008) | |
| 1-121, gnl|hg17|chr19 (47172391-47172491) | |
| 1-121, gnl|Hg17|chr19 (47172527-47172407) | |
| 1-121, gnl|loxAfr1|scaffold_41326 (14719-14631) | |
| 1-121, gnl|mm7|chr7 (21777451-21777548) | |
| 1-121, gnl|Mm7|chr7 (21777584-21777464) | |
| 1-121, gnl|monDom2|scaffold_13 (61472859-61472947) | |
| 1-121, gnl|oryCun1|scaffold_203179 (134978-135074) | |
| 1-121, gnl|panTro1|chr20 (44061020-44061120) | |
| 1-121, gnl|rheMac2|chr19 (48280941-48281041) | |
| 1-121, gnl|rn3|chr1 (80369560-80369653) | |
| 1-121, gnl|tetNig1|chr3 (1574315-1574415) | |
| 1-121, gnl|xenTro1|scaffold_993 (300381-300465) | |
| 138-330, gnl|bosTau2|chr17 (30346223-30346034) | |
| 138-330, gnl|canFam2|chr26 (11219454-11219705) | |
| 138-330, gnl|danRer3|chr21 (7870520-7870764) | |
| 138-330, gnl|dasNov1|scaffold_28983 (8364-8114) | |
| 138-330, gnl|echTel1|scaffold_219181 (5639-5379) | |
| 138-330, gnl|fr1|chrUn (56442667-56442916) | |
| 138-330, gnl|galGal2|chr15 (5268802-5268553) | |
| 138-330, gnl|hg17|chr12 (109242732-109242983) | |
| 138-330, gnl|Hg17|chr12 (109242752-109242941) | |
| 138-330, gnl|loxAfr1|scaffold_14582 (36214-36464) | |
| 138-330, gnl|mm7|chr5 (121694440-121694190) | |
| 138-330, gnl|Mm7|chr5 (121694419-121694230) | |
| 138-330, gnl|monDom2|scaffold_97 (975574-975327) | |
| 138-330, gnl|oryCun1|scaffold_197368 (6755-7006) | |
| 138-330, gnl|panTro1|chr10 (111838353-111838604) | |
| 138-330, gnl|rheMac2|chr11 (111253303-111253554) | |
| 138-330, gnl|rn3|chr12 (35172882-35173130) | |
| 138-330, gnl|tetNig1|chr12 (11602259-11602496) | |
| 138-330, gnl|xenTro1|scaffold_501 (577942-577691) | |
| 568-714, gnl|bosTau2|chr18 (44714263-44714117) | |
| 568-714, gnl|Hg17|chr19 (47165573-47165427) | |
| 568-714, gnl|Mm7|chr7 (21770184-21770038) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr18 (44718839-44718719) | |
| 1-121, gnl|canFam2|chr1 (115240138-115240032) | |
| 1-121, gnl|danRer3|chr19 (1737084-1737176) | |
| 1-121, gnl|dasNov1|scaffold_22945 (20884-20972) | |
| 1-121, gnl|echTel1|scaffold_290394 (49313-49225) | |
| 1-121, gnl|fr1|chrUn (100140686-100140599) | |
| 1-121, gnl|galGal2|chr1 (74373921-74374008) | |
| 1-121, gnl|hg17|chr19 (47172391-47172491) | |
| 1-121, gnl|Hg17|chr19 (47172527-47172407) | |
| 1-121, gnl|loxAfr1|scaffold_41326 (14719-14631) | |
| 1-121, gnl|mm7|chr7 (21777451-21777548) | |
| 1-121, gnl|Mm7|chr7 (21777584-21777464) | |
| 1-121, gnl|monDom2|scaffold_13 (61472859-61472947) | |
| 1-121, gnl|oryCun1|scaffold_203179 (134978-135074) | |
| 1-121, gnl|panTro1|chr20 (44061020-44061120) | |
| 1-121, gnl|rheMac2|chr19 (48280941-48281041) | |
| 1-121, gnl|rn3|chr1 (80369560-80369653) | |
| 1-121, gnl|tetNig1|chr3 (1574315-1574415) | |
| 1-121, gnl|xenTro1|scaffold_993 (300381-300465) | |
| 138-330, gnl|bosTau2|chr17 (30346223-30346034) | |
| 138-330, gnl|canFam2|chr26 (11219454-11219705) | |
| 138-330, gnl|danRer3|chr21 (7870520-7870764) | |
| 138-330, gnl|dasNov1|scaffold_28983 (8364-8114) | |
| 138-330, gnl|echTel1|scaffold_219181 (5639-5379) | |
| 138-330, gnl|fr1|chrUn (56442667-56442916) | |
| 138-330, gnl|galGal2|chr15 (5268802-5268553) | |
| 138-330, gnl|hg17|chr12 (109242732-109242983) | |
| 138-330, gnl|Hg17|chr12 (109242752-109242941) | |
| 138-330, gnl|loxAfr1|scaffold_14582 (36214-36464) | |
| 138-330, gnl|mm7|chr5 (121694440-121694190) | |
| 138-330, gnl|Mm7|chr5 (121694419-121694230) | |
| 138-330, gnl|monDom2|scaffold_97 (975574-975327) | |
| 138-330, gnl|oryCun1|scaffold_197368 (6755-7006) | |
| 138-330, gnl|panTro1|chr10 (111838353-111838604) | |
| 138-330, gnl|rheMac2|chr11 (111253303-111253554) | |
| 138-330, gnl|rn3|chr12 (35172882-35173130) | |
| 138-330, gnl|tetNig1|chr12 (11602259-11602496) | |
| 138-330, gnl|xenTro1|scaffold_501 (577942-577691) | |
| 568-714, gnl|bosTau2|chr18 (44714263-44714117) | |
| 568-714, gnl|Hg17|chr19 (47165573-47165427) | |
| 568-714, gnl|Mm7|chr7 (21770184-21770038) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| ece (0.229305) | |
| ecc (0.115035) |