Non-Coding RNA Search

Ss1.1-rebs27c_m11.5

Sequence:


               
               CCTAAATGCAACTTCTAGAGTTTCATGTAATAACATTGAGTGAGGCCCAACAAAATTCTC
AGGCATTGTGTATAGAAATTAGGCCTTATGAGGAAGAGAAGGGAACTCAAGAATATTAGA
AAACAGCAACAGCTTCCTGCAACCTTCAAAAAAAACACGAGACTTAGTCTTTTACAGTGT
CTCCCGAGTAGTGTGGTTGACTAGCAGGTGATGGAGATTATAATCTCTCTCTTTGAGAAA
GCTTTTTTCAACATTATCTCAAGCTTGCTGGAGTGGAATATCTACTTGTTATCTGTTTCC
TTGTCTCAGAGTATTTCAGAACATTTAGGAAGCCCCAGGCTTATGGCCTAATAGTAGCCT
ACACAGAAGTCCTGACTTGGAGCATATCCATTCCAGGGGGTGTCTTCTTCCACGTTCCAC
TTTTGCAAAACAGTAACTCTCACTTGATTCATAATTCAAGCAGTTACTGGTGACTACTCA
GTTCTAGGCACTACGCTAATTTCTAGGTATACAGTGATGAGCAAGATAGACAGAGCCCCC
TTATAAAGCAATAGTAATTCAAACCGTGTAGTATGAAGAGATCTATGAAATAAAACAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAATGCAACTTCTAGAGTTTCATGTAATAACATTGAGTGAGGCCCAACAAAATTCTC
AGGCATTGTGTATAGAAATTAGGCCTTATGAGGAAGAGAAGGGAACTCAAGAATATTAGA
AAACAGCAACAGCTTCCTGCAACCTTCAAAAAAAACACGAGACTTAGTCTTTTACAGTGT
CTCCCGAGTAGTGTGGTTGACTAGCAGGTGATGGAGATTATAATCTCTCTCTTTGAGAAA
GCTTTTTTCAACATTATCTCAAGCTTGCTGGAGTGGAATATCTACTTGTTATCTGTTTCC
TTGTCTCAGAGTATTTCAGAACATTTAGGAAGCCCCAGGCTTATGGCCTAATAGTAGCCT
ACACAGAAGTCCTGACTTGGAGCATATCCATTCCAGGGGGTGTCTTCTTCCACGTTCCAC
TTTTGCAAAACAGTAACTCTCACTTGATTCATAATTCAAGCAGTTACTGGTGACTACTCA
GTTCTAGGCACTACGCTAATTTCTAGGTATACAGTGATGAGCAAGATAGACAGAGCCCCC
TTATAAAGCAATAGTAATTCAAACCGTGTAGTATGAAGAGATCTATGAAATAAAACAGAT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               41-573, gnl|bosTau2|chr3 (67577303-67576771)
               

               
               41-573, gnl|canFam2|chr15 (17105389-17104709)
               

               
               41-573, gnl|dasNov1|scaffold_5904 (22826-23495)
               

               
               41-573, gnl|hg17|chr1 (46473116-46473723)
               

               
               41-573, gnl|loxAfr1|scaffold_25473 (26383-27079)
               

               
               41-573, gnl|oryCun1|scaffold_80864 (4746-5386)
               

               
               41-573, gnl|panTro1|chr1_random (67120982-67120375)
               

               
               41-573, gnl|rheMac2|chr1 (49232964-49233595)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-573, gnl|bosTau2|chr3 (67577303-67576771)
               

               
               41-573, gnl|canFam2|chr15 (17105389-17104709)
               

               
               41-573, gnl|dasNov1|scaffold_5904 (22826-23495)
               

               
               41-573, gnl|hg17|chr1 (46473116-46473723)
               

               
               41-573, gnl|loxAfr1|scaffold_25473 (26383-27079)
               

               
               41-573, gnl|oryCun1|scaffold_80864 (4746-5386)
               

               
               41-573, gnl|panTro1|chr1_random (67120982-67120375)
               

               
               41-573, gnl|rheMac2|chr1 (49232964-49233595)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)
               

               
               ebs (0.118301)

	41-573, gnl\|bosTau2\|chr3 (67577303-67576771)
	41-573, gnl\|canFam2\|chr15 (17105389-17104709)
	41-573, gnl\|dasNov1\|scaffold_5904 (22826-23495)
	41-573, gnl\|hg17\|chr1 (46473116-46473723)
	41-573, gnl\|loxAfr1\|scaffold_25473 (26383-27079)
	41-573, gnl\|oryCun1\|scaffold_80864 (4746-5386)
	41-573, gnl\|panTro1\|chr1_random (67120982-67120375)
	41-573, gnl\|rheMac2\|chr1 (49232964-49233595)