Non-Coding RNA Search

Ss1.1-rebs28c_b14.5

Sequence:


               
               TCCTCTCCTTCAAAATCGCTCGGGCGCTCCGTGCTTTCCCATTTCCTGGCTGTGAGGACC
CTTTGGTTCCTTTCCCTATTCAACTCTTCAGCTTTCAGAGTGTTGCCACGTCTCTAAGCT
CTAATCCCAGCACTCTCACACACATGCAGACACTCACGTTTCCTGTCCCTGTGTGACACC
CACCCGGTCCCCGCGCGGCGTCCTCCTCCCGCCACACACACACACACACACACGCACGCA
CGCACGCGCGCAGGGCCGAGCGGAGGACAGCTCGCCGGCAGTTCGCACTTGGAGGCGTCC
TGCTTCGGTCTCGCAGCGCTGATGGCATCTCCGGGCTCGGGCTTTTGGTCCTTCGGATCT
GAAGATGGCTCTGGGGATCCAGAGAACTCTGGCACAGCGAGAGCTTGGTGTCAGGTGGCC
CAGAAGTTCACGGGCGGCATCGGAAACAAGCTATGCGCCCTGCTCTACGGAGACGCAGAG
AAGCCGGCGGAGAGCGGCGGAAGCCAGCCCCCGCGGACCACCTCCCGCAAGGCTACCTGC
GCCTGCAACCAGAAGCCCTGCAGCTGCCCCAAAGCGGAGGTCAACTATGCGTTTCTACAC
GCAACAGACCTGCTACCAGCGTGTGATGGAGAAAGGCCCACTTGGGCATTTCTGCAAGAT
GTTATGGGCATTTGGCTTCAGTATGTGGTGAAAAGTTTCGATAGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCTCCTTCAAAATCGCTCGGGCGCTCCGTGCTTTCCCATTTCCTGGCTGTGAGGACC
CTTTGGTTCCTTTCCCTATTCAACTCTTCAGCTTTCAGAGTGTTGCCACGTCTCTAAGCT
CTAATCCCAGCACTCTCACACACATGCAGACACTCACGTTTCCTGTCCCTGTGTGACACC
CACCCGGTCCCCGCGCGGCGTCCTCCTCCCGCCACACACACACACACACACACGCACGCA
CGCACGCGCGCAGGGCCGAGCGGAGGACAGCTCGCCGGCAGTTCGCACTTGGAGGCGTCC
TGCTTCGGTCTCGCAGCGCTGATGGCATCTCCGGGCTCGGGCTTTTGGTCCTTCGGATCT
GAAGATGGCTCTGGGGATCCAGAGAACTCTGGCACAGCGAGAGCTTGGTGTCAGGTGGCC
CAGAAGTTCACGGGCGGCATCGGAAACAAGCTATGCGCCCTGCTCTACGGAGACGCAGAG
AAGCCGGCGGAGAGCGGCGGAAGCCAGCCCCCGCGGACCACCTCCCGCAAGGCTACCTGC
GCCTGCAACCAGAAGCCCTGCAGCTGCCCCAAAGCGGAGGTCAACTATGCGTTTCTACAC
GCAACAGACCTGCTACCAGCGTGTGATGGAGAAAGGCCCACTTGGGCATTTCTGCAAGAT
GTTATGGGCATTTGGCTTCAGTATGTGGTGAAAAGTTTCGATAGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q71UF5_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71UF5_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-444, gnl|bosTau2|chr13 (14906570-14907056)
               

               
               2-444, gnl|Hg17|chr10 (26545418-26545872)
               

               
               2-444, gnl|Mm7|chr2 (22607272-22607736)
               


               
               457-607, gnl|bosTau2|chr13 (14907954-14908104)
               

               
               457-607, gnl|Hg17|chr10 (26546776-26546926)
               

               
               457-607, gnl|Mm7|chr2 (22608637-22608787)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-444, gnl|bosTau2|chr13 (14906570-14907056)
               

               
               2-444, gnl|Hg17|chr10 (26545418-26545872)
               

               
               2-444, gnl|Mm7|chr2 (22607272-22607736)
               


               
               457-607, gnl|bosTau2|chr13 (14907954-14908104)
               

               
               457-607, gnl|Hg17|chr10 (26546776-26546926)
               

               
               457-607, gnl|Mm7|chr2 (22608637-22608787)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	2-444, gnl\|bosTau2\|chr13 (14906570-14907056)
	2-444, gnl\|Hg17\|chr10 (26545418-26545872)
	2-444, gnl\|Mm7\|chr2 (22607272-22607736)

	457-607, gnl\|bosTau2\|chr13 (14907954-14908104)
	457-607, gnl\|Hg17\|chr10 (26546776-26546926)
	457-607, gnl\|Mm7\|chr2 (22608637-22608787)