Non-Coding RNA Search

Ss1.1-rebs28c_e13.5

Sequence:


               
               CCAACATCGCTGGATTTATTGAGGTCGCCACCACATCCACTAAGAGGGCTGCCAGAGGGG
ACCCAGCCTGGGGCCTGAACTGAGGGACCGTGTGCCACACCTGGTGGCTCCTCCAGGACT
TGTCACAAGGAATGGGCAGCTCAGAGCGCCCGAAGAGAAGCGGAAGCTGAAGCTGGGAGA
GCAGGAGAGGGGGGAGCAGGAACAAAAATTGCATCTAGACGGAGGCGAACAAAACCAAAC
CAAAACCCAAATGTTTTCTTGTCTGCTCTCGGGATCCAGGCGCCGCCTTGTCCCAAAGGC
CCCTTAGCCGGACATCTCCTCACGCTGCTCCTTGTTCCTGCGGACCTCGGCCGCGTGCAG
CTCCTTCTCGCGCAGCCGCTCGCGCAGCGCCGCCAGGTGAGCCTCGCGGATCTCCTTGCT
GAGCTCCATCTTGTAGTTGAGCTTCTCCTCCGCCAGGCGGCTGAAGTTGTTGTTCTCCTC
CAGCGCCTTGTGCAGCACCTCGCGCTCGTGTTCGCGCCGCTCCGCCAGCTGCTTCAGCAC
CTGCGCCTCCTGCGTCTTCCTCCGCTCCTCAGCCGCCTCCAGCCGCTTCTGCAGCTCCTC
CAGGGAGGTGTCCTTCCTCTTGGGGGGGGAGGAGAGCACAGGGCTCTCCGGGGACAGGTC
GGAAGGGGACTTGAGGATGACCTCAAAGCTCTGGCCAGAGGCCCTCTTGTCCAGCTGCTT
CACCTCCATGTCCCCGTACTGGTAGACGGTGTTGGGGTGTGGCTGTGGGTAGAAGCAGGA
GCAGATGAGTGACAGCACGGACAGCTCCTTCATCTTCTCCTTGTAGGCCGACACGGTGCT
GGCCATGGTGCTGGCGGTGGCGGGGCTGCGGAGGTCGGAGAGGCGCGGGCGGCGGCTGGA
GCTGCAGTCGGCGAATGCTGCAGTGCCGGGGAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACATCGCTGGATTTATTGAGGTCGCCACCACATCCACTAAGAGGGCTGCCAGAGGGG
ACCCAGCCTGGGGCCTGAACTGAGGGACCGTGTGCCACACCTGGTGGCTCCTCCAGGACT
TGTCACAAGGAATGGGCAGCTCAGAGCGCCCGAAGAGAAGCGGAAGCTGAAGCTGGGAGA
GCAGGAGAGGGGGGAGCAGGAACAAAAATTGCATCTAGACGGAGGCGAACAAAACCAAAC
CAAAACCCAAATGTTTTCTTGTCTGCTCTCGGGATCCAGGCGCCGCCTTGTCCCAAAGGC
CCCTTAGCCGGACATCTCCTCACGCTGCTCCTTGTTCCTGCGGACCTCGGCCGCGTGCAG
CTCCTTCTCGCGCAGCCGCTCGCGCAGCGCCGCCAGGTGAGCCTCGCGGATCTCCTTGCT
GAGCTCCATCTTGTAGTTGAGCTTCTCCTCCGCCAGGCGGCTGAAGTTGTTGTTCTCCTC
CAGCGCCTTGTGCAGCACCTCGCGCTCGTGTTCGCGCCGCTCCGCCAGCTGCTTCAGCAC
CTGCGCCTCCTGCGTCTTCCTCCGCTCCTCAGCCGCCTCCAGCCGCTTCTGCAGCTCCTC
CAGGGAGGTGTCCTTCCTCTTGGGGGGGGAGGAGAGCACAGGGCTCTCCGGGGACAGGTC
GGAAGGGGACTTGAGGATGACCTCAAAGCTCTGGCCAGAGGCCCTCTTGTCCAGCTGCTT
CACCTCCATGTCCCCGTACTGGTAGACGGTGTTGGGGTGTGGCTGTGGGTAGAAGCAGGA
GCAGATGAGTGACAGCACGGACAGCTCCTTCATCTTCTCCTTGTAGGCCGACACGGTGCT
GGCCATGGTGCTGGCGGTGGCGGGGCTGCGGAGGTCGGAGAGGCGCGGGCGGCGGCTGGA
GCTGCAGTCGGCGAATGCTGCAGTGCCGGGGAGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q545T6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q545T6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-732, + strand, RNAz p=0.994436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-732, + strand, RNAz p=0.994436

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-378, gnl|bosTau2|chr13 (35152179-35151776)
               

               
               2-378, gnl|Hg17|chr20 (61742828-61743206)
               

               
               2-378, gnl|Mm7|chr2 (181807373-181807748)
               


               
               543-732, gnl|bosTau2|chr13 (35149909-35149721)
               

               
               543-732, gnl|Hg17|chr20 (61745530-61745729)
               

               
               543-732, gnl|Mm7|chr2 (181809623-181809809)
               


               
               830-936, gnl|bosTau2|chr13 (35144033-35143926)
               

               
               830-936, gnl|galGal2|chr20 (9347074-9346966)
               

               
               830-936, gnl|hg17|chr20 (61755120-61755247)
               

               
               830-936, gnl|Hg17|chr20 (61755126-61755248)
               

               
               830-936, gnl|mm7|chr2 (181815102-181815225)
               

               
               830-936, gnl|Mm7|chr2 (181815108-181815216)
               

               
               830-936, gnl|panTro1|chr21 (64815635-64815763)
               

               
               830-936, gnl|rheMac2|chr10 (704198-704076)
               

               
               830-936, gnl|rn3|chr3 (170360860-170360983)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-378, gnl|bosTau2|chr13 (35152179-35151776)
               

               
               2-378, gnl|Hg17|chr20 (61742828-61743206)
               

               
               2-378, gnl|Mm7|chr2 (181807373-181807748)
               


               
               543-732, gnl|bosTau2|chr13 (35149909-35149721)
               

               
               543-732, gnl|Hg17|chr20 (61745530-61745729)
               

               
               543-732, gnl|Mm7|chr2 (181809623-181809809)
               


               
               830-936, gnl|bosTau2|chr13 (35144033-35143926)
               

               
               830-936, gnl|galGal2|chr20 (9347074-9346966)
               

               
               830-936, gnl|hg17|chr20 (61755120-61755247)
               

               
               830-936, gnl|Hg17|chr20 (61755126-61755248)
               

               
               830-936, gnl|mm7|chr2 (181815102-181815225)
               

               
               830-936, gnl|Mm7|chr2 (181815108-181815216)
               

               
               830-936, gnl|panTro1|chr21 (64815635-64815763)
               

               
               830-936, gnl|rheMac2|chr10 (704198-704076)
               

               
               830-936, gnl|rn3|chr3 (170360860-170360983)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ebs (1.53792)
               

               
               cbr (1.0238)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               fhi (0.508733)
               

               
               eye (0.341006)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (1.53792)
               

               
               cbr (1.0238)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               fhi (0.508733)
               

               
               eye (0.341006)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

	2-378, gnl\|bosTau2\|chr13 (35152179-35151776)
	2-378, gnl\|Hg17\|chr20 (61742828-61743206)
	2-378, gnl\|Mm7\|chr2 (181807373-181807748)

	543-732, gnl\|bosTau2\|chr13 (35149909-35149721)
	543-732, gnl\|Hg17\|chr20 (61745530-61745729)
	543-732, gnl\|Mm7\|chr2 (181809623-181809809)

	830-936, gnl\|bosTau2\|chr13 (35144033-35143926)
	830-936, gnl\|galGal2\|chr20 (9347074-9346966)
	830-936, gnl\|hg17\|chr20 (61755120-61755247)
	830-936, gnl\|Hg17\|chr20 (61755126-61755248)
	830-936, gnl\|mm7\|chr2 (181815102-181815225)
	830-936, gnl\|Mm7\|chr2 (181815108-181815216)
	830-936, gnl\|panTro1\|chr21 (64815635-64815763)
	830-936, gnl\|rheMac2\|chr10 (704198-704076)
	830-936, gnl\|rn3\|chr3 (170360860-170360983)

	ebs (1.53792)
	cbr (1.0238)
	ece (0.687916)
	ecc (0.575175)
	hyp (0.571347)
	fhi (0.508733)
	eye (0.341006)
	fcc (0.197785)
	nco (0.161734)
	lnt (0.142308)
	nca (0.136874)
	pgl (0.118483)