Ss1.1-rebs28c_g2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAGAGTGACTCCATCCTCCTGACAAGTGATGGCCGGATAAAGTTGTCTGACTTTGGTT TCTGTGCTCAAGTTTCCAAAGAGGTGCCCAAGAGGAAATCATTGGTTGGCACGCCCTACT GGATGGCACCTGAGGTGATTTCTAGACTGCCTTATGGGACAGAGGTGGACATCTGGTCCC TTGGGATCATGGTGATAGAGATGATTGACGGCGAGCCCCCCTACTTCAACGAGCCTCCCC TCCAGGCCATGCGGCGGATCCGGGACAGTTTACCTCCAAGAGGGAAGGACCTGCACAAGG TTTCTTCCATGCTCCGAGGATTCCTGAACCTGATGCTGGTGAGGGAACCCTCTCAAAGAG CCACAGCGCAGGAACTCCTTGGACATCCATTCTTGAAGCTGGCAGGTCCGCCATCTTGCA TTGTTCCCCTCATGAGACAATACAGGCATCACTGAGCAGAGGATTCATATAGGTGACAAA GCTACACGGGGACATGCAAATAATTCAGGACAACACAAGGAAACCAGAGAACTTGCAAAA GGCCTACTACGTCTTCCAGACCAGCTGATGGGTGGGACTGCTCAATGACCGGCAGGGTTC GGCAGACCAGTGCATCTTCTTGTGTCTTAAACAGGCATCTCTCCACCAACAGGGGGCGTG GTCATTTGGAACACGGCTTTAATAAGTCATTATTATATTTTTCAGCCCTTCATCCAGCAA ATCAGAAGGAACTCAGTACTGTCACGATACATCCTCGCCACATGCAGGGTAATGCATAGG ATTTTCTATATTGAAAGAATACTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAAGAAGGG AAACCAAAAGGCCCTTTTTTTTTAAGGGGACCAGGGAAATGTATTTGGCAAGGAATTGGA AATTTTTCGGAACAAAAGTTTGGATAATTAATAGAACTTGGATGCCACGTACCCCTTGTT TAAGTGGAGGAAATACTGGTTAACTACCAAAAGTTGGAACAAAGTCTTTCCTACTTTTTA AATCCCTTTAAAAAAACCAACAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAGAGTGACTCCATCCTCCTGACAAGTGATGGCCGGATAAAGTTGTCTGACTTTGGTT TCTGTGCTCAAGTTTCCAAAGAGGTGCCCAAGAGGAAATCATTGGTTGGCACGCCCTACT GGATGGCACCTGAGGTGATTTCTAGACTGCCTTATGGGACAGAGGTGGACATCTGGTCCC TTGGGATCATGGTGATAGAGATGATTGACGGCGAGCCCCCCTACTTCAACGAGCCTCCCC TCCAGGCCATGCGGCGGATCCGGGACAGTTTACCTCCAAGAGGGAAGGACCTGCACAAGG TTTCTTCCATGCTCCGAGGATTCCTGAACCTGATGCTGGTGAGGGAACCCTCTCAAAGAG CCACAGCGCAGGAACTCCTTGGACATCCATTCTTGAAGCTGGCAGGTCCGCCATCTTGCA TTGTTCCCCTCATGAGACAATACAGGCATCACTGAGCAGAGGATTCATATAGGTGACAAA GCTACACGGGGACATGCAAATAATTCAGGACAACACAAGGAAACCAGAGAACTTGCAAAA GGCCTACTACGTCTTCCAGACCAGCTGATGGGTGGGACTGCTCAATGACCGGCAGGGTTC GGCAGACCAGTGCATCTTCTTGTGTCTTAAACAGGCATCTCTCCACCAACAGGGGGCGTG GTCATTTGGAACACGGCTTTAATAAGTCATTATTATATTTTTCAGCCCTTCATCCAGCAA ATCAGAAGGAACTCAGTACTGTCACGATACATCCTCGCCACATGCAGGGTAATGCATAGG ATTTTCTATATTGAAAGAATACTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAAGAAGGG AAACCAAAAGGCCCTTTTTTTTTAAGGGGACCAGGGAAATGTATTTGGCAAGGAATTGGA AATTTTTCGGAACAAAAGTTTGGATAATTAATAGAACTTGGATGCCACGTACCCCTTGTT TAAGTGGAGGAAATACTGGTTAACTACCAAAAGTTGGAACAAAGTCTTTCCTACTTTTTA AATCCCTTTAAAAAAACCAACAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 35-167, gnl|bosTau2|chr18 (42337467-42337335) | |
| 35-167, gnl|canFam2|chr1 (116919026-116918880) | |
| 35-167, gnl|danRer3|chrUn (18332488-18332634) | |
| 35-167, gnl|dasNov1|scaffold_204 (143753-143885) | |
| 35-167, gnl|echTel1|scaffold_239936 (1132-1000) | |
| 35-167, gnl|fr1|chrUn (89361789-89361651) | |
| 35-167, gnl|galGal2|chrUn (154245620-154245477) | |
| 35-167, gnl|hg17|chr19 (44359055-44359201) | |
| 35-167, gnl|Hg17|chr19 (44359066-44359198) | |
| 35-167, gnl|loxAfr1|scaffold_86703 (8255-8112) | |
| 35-167, gnl|mm7|chr7 (25494838-25494693) | |
| 35-167, gnl|Mm7|chr7 (25494826-25494694) | |
| 35-167, gnl|monDom2|scaffold_139 (914405-914551) | |
| 35-167, gnl|oryCun1|scaffold_206500 (136557-136703) | |
| 35-167, gnl|panTro1|chr20_random (17308646-17308792) | |
| 35-167, gnl|rheMac2|chr19 (45514652-45514797) | |
| 35-167, gnl|rn3|chr1 (83750986-83750841) | |
| 35-167, gnl|tetNig1|chr16 (6674091-6674231) | |
| 35-167, gnl|xenTro1|scaffold_710 (470895-470766) | |
| 38-166, gnl|bosTau2|chr13 (547741-547869) | |
| 38-166, gnl|canFam2|chr24 (15662583-15662402) | |
| 38-166, gnl|danRer3|chrUn (18332634-18332468) | |
| 38-166, gnl|dasNov1|scaffold_204 (143890-143710) | |
| 38-166, gnl|echTel1|scaffold_302912 (9207-9378) | |
| 38-166, gnl|fr1|chrUn (89361651-89361796) | |
| 38-166, gnl|galGal2|chr14 (18300995-18301155) | |
| 38-166, gnl|hg17|chr20 (9473010-9473190) | |
| 38-166, gnl|Hg17|chr20 (9473142-9473014) | |
| 38-166, gnl|loxAfr1|scaffold_52413 (9452-9325) | |
| 38-166, gnl|mm7|chr2 (135828240-135828420) | |
| 38-166, gnl|Mm7|chr2 (135828372-135828244) | |
| 38-166, gnl|monDom2|scaffold_1 (41481156-41481336) | |
| 38-166, gnl|oryCun1|scaffold_77007 (575-753) | |
| 38-166, gnl|panTro1|chr21 (9362505-9362685) | |
| 38-166, gnl|rheMac2|chr10 (42853504-42853684) | |
| 38-166, gnl|rn3|chr3 (124063038-124063218) | |
| 38-166, gnl|tetNig1|chr14 (7323391-7323246) | |
| 38-166, gnl|xenTro1|scaffold_239 (1315580-1315729) | |
| 298-1041, gnl|bosTau2|chr13 (552245-552965) | |
| 298-1041, gnl|Hg17|chr20 (9468266-9467527) | |
| 298-1041, gnl|Mm7|chr2 (135824231-135823471) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-167, gnl|bosTau2|chr18 (42337467-42337335) | |
| 35-167, gnl|canFam2|chr1 (116919026-116918880) | |
| 35-167, gnl|danRer3|chrUn (18332488-18332634) | |
| 35-167, gnl|dasNov1|scaffold_204 (143753-143885) | |
| 35-167, gnl|echTel1|scaffold_239936 (1132-1000) | |
| 35-167, gnl|fr1|chrUn (89361789-89361651) | |
| 35-167, gnl|galGal2|chrUn (154245620-154245477) | |
| 35-167, gnl|hg17|chr19 (44359055-44359201) | |
| 35-167, gnl|Hg17|chr19 (44359066-44359198) | |
| 35-167, gnl|loxAfr1|scaffold_86703 (8255-8112) | |
| 35-167, gnl|mm7|chr7 (25494838-25494693) | |
| 35-167, gnl|Mm7|chr7 (25494826-25494694) | |
| 35-167, gnl|monDom2|scaffold_139 (914405-914551) | |
| 35-167, gnl|oryCun1|scaffold_206500 (136557-136703) | |
| 35-167, gnl|panTro1|chr20_random (17308646-17308792) | |
| 35-167, gnl|rheMac2|chr19 (45514652-45514797) | |
| 35-167, gnl|rn3|chr1 (83750986-83750841) | |
| 35-167, gnl|tetNig1|chr16 (6674091-6674231) | |
| 35-167, gnl|xenTro1|scaffold_710 (470895-470766) | |
| 38-166, gnl|bosTau2|chr13 (547741-547869) | |
| 38-166, gnl|canFam2|chr24 (15662583-15662402) | |
| 38-166, gnl|danRer3|chrUn (18332634-18332468) | |
| 38-166, gnl|dasNov1|scaffold_204 (143890-143710) | |
| 38-166, gnl|echTel1|scaffold_302912 (9207-9378) | |
| 38-166, gnl|fr1|chrUn (89361651-89361796) | |
| 38-166, gnl|galGal2|chr14 (18300995-18301155) | |
| 38-166, gnl|hg17|chr20 (9473010-9473190) | |
| 38-166, gnl|Hg17|chr20 (9473142-9473014) | |
| 38-166, gnl|loxAfr1|scaffold_52413 (9452-9325) | |
| 38-166, gnl|mm7|chr2 (135828240-135828420) | |
| 38-166, gnl|Mm7|chr2 (135828372-135828244) | |
| 38-166, gnl|monDom2|scaffold_1 (41481156-41481336) | |
| 38-166, gnl|oryCun1|scaffold_77007 (575-753) | |
| 38-166, gnl|panTro1|chr21 (9362505-9362685) | |
| 38-166, gnl|rheMac2|chr10 (42853504-42853684) | |
| 38-166, gnl|rn3|chr3 (124063038-124063218) | |
| 38-166, gnl|tetNig1|chr14 (7323391-7323246) | |
| 38-166, gnl|xenTro1|scaffold_239 (1315580-1315729) | |
| 298-1041, gnl|bosTau2|chr13 (552245-552965) | |
| 298-1041, gnl|Hg17|chr20 (9468266-9467527) | |
| 298-1041, gnl|Mm7|chr2 (135824231-135823471) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ecc (0.115035) |