Non-Coding RNA Search

Ss1.1-rebs28c_p20.5

Sequence:


               
               AGCTGCAGGCCGCCTTCCTCACCTGTCTCTACCTCGCCTACTCCTACATGGGCAACGAGA
TCTCCTACCCGCTCAAGCCCTTCCTCGTGGAGCCCGACAAGGAGCGCTTCTGGCAACGCT
GCCTGCGCCTCATCCAGCGGCTCAGCCCGCAGATGCTGCGGCTCAATGCCGACCCCCACT
TTTTCACGCAGGTCTTCCAAGACCTCAAGAACGAGGGCGAGGCCGCCGCCGGCTCCGGGG
GTCCACCCAGCGGGGGAGCGCCCGCGGCCCCCTCCTCCTCCTCAGCTGCCAGGGACAGCT
GCGCGACTGGAGCCAAGCACTGGACTATGAACCTGGACCGCTAGGGAAACCCAAGGGCCG
CCCCGCTTTCCGCCCCAGCCCCTGACACACACTCGGAGCCCCCCGGGACCATCAAGCCGC
CGCCGCTGTTACAGCCGGTTCTAGCCGTGGCCCGAGAAGGAGCCGCCCCTGCCCCGCAGG
GGAAGGTGGAGGCCAGGATGCCGGAGCCGCGGCGTCTGGATTTGTTGGGCTCAGGGTGGG
GGTAGGGGGTGAGCGCGGGAGGGGACCCCCAACGTAACCCTTTCTATCTTCGTCCCCATC
TCTTCAATTCTGCCCAGGTCTCCGCCTCCCCTTCTGTGTGTGACTGTAAGAAATGGGATT
TGCCCATTTCTTCATCTCCTGTATCTTCACCTTCCCTCTCGCCTTTCCATCTCCATCCCT
GCCTTTCCAGTTTCTGTTCCTTGGGTGTATTTCCGTCTGGATCTTACCCCCTACATGACT
ATCTCTCATTACCCCGTTTGTCTTTCTGCACCTGTGTCACCACCTCCCGTTCTCTTTTTC
CTCGCTCCTGGTATTTGTCACCATGTCCTCTCCTGTCTGCCTTCCCCCCATCTGCTTGTG
TCAGCTTGCATTTCTTCCCCCGACTGAGCCCCCCTTACTCTTCTCTCCGGACCAAAGGGA
ACATTATTTCTTAATTTGGATCGGCTGAGGTGGTGCCGCGAGAAACTGCAGCCCCAGGAG
CCCAGACAAACCACCAGGATGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCAGGCCGCCTTCCTCACCTGTCTCTACCTCGCCTACTCCTACATGGGCAACGAGA
TCTCCTACCCGCTCAAGCCCTTCCTCGTGGAGCCCGACAAGGAGCGCTTCTGGCAACGCT
GCCTGCGCCTCATCCAGCGGCTCAGCCCGCAGATGCTGCGGCTCAATGCCGACCCCCACT
TTTTCACGCAGGTCTTCCAAGACCTCAAGAACGAGGGCGAGGCCGCCGCCGGCTCCGGGG
GTCCACCCAGCGGGGGAGCGCCCGCGGCCCCCTCCTCCTCCTCAGCTGCCAGGGACAGCT
GCGCGACTGGAGCCAAGCACTGGACTATGAACCTGGACCGCTAGGGAAACCCAAGGGCCG
CCCCGCTTTCCGCCCCAGCCCCTGACACACACTCGGAGCCCCCCGGGACCATCAAGCCGC
CGCCGCTGTTACAGCCGGTTCTAGCCGTGGCCCGAGAAGGAGCCGCCCCTGCCCCGCAGG
GGAAGGTGGAGGCCAGGATGCCGGAGCCGCGGCGTCTGGATTTGTTGGGCTCAGGGTGGG
GGTAGGGGGTGAGCGCGGGAGGGGACCCCCAACGTAACCCTTTCTATCTTCGTCCCCATC
TCTTCAATTCTGCCCAGGTCTCCGCCTCCCCTTCTGTGTGTGACTGTAAGAAATGGGATT
TGCCCATTTCTTCATCTCCTGTATCTTCACCTTCCCTCTCGCCTTTCCATCTCCATCCCT
GCCTTTCCAGTTTCTGTTCCTTGGGTGTATTTCCGTCTGGATCTTACCCCCTACATGACT
ATCTCTCATTACCCCGTTTGTCTTTCTGCACCTGTGTCACCACCTCCCGTTCTCTTTTTC
CTCGCTCCTGGTATTTGTCACCATGTCCTCTCCTGTCTGCCTTCCCCCCATCTGCTTGTG
TCAGCTTGCATTTCTTCCCCCGACTGAGCCCCCCTTACTCTTCTCTCCGGACCAAAGGGA
ACATTATTTCTTAATTTGGATCGGCTGAGGTGGTGCCGCGAGAAACTGCAGCCCCAGGAG
CCCAGACAAACCACCAGGATGGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96G76_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96G76_HUMAN

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-219, gnl|bosTau2|chr19 (12591408-12591626)
               

               
               1-219, gnl|canFam2|chr9 (43823693-43823091)
               

               
               1-219, gnl|danRer3|chr12 (25152319-25151713)
               

               
               1-219, gnl|dasNov1|scaffold_62588 (3873-4475)
               

               
               1-219, gnl|fr1|chrUn (278032933-278033532)
               

               
               1-219, gnl|hg17|chr17 (27839076-27839678)
               

               
               1-219, gnl|Hg17|chr17 (27839413-27839631)
               

               
               1-219, gnl|mm7|chr11 (80559408-80560011)
               

               
               1-219, gnl|Mm7|chr11 (80559745-80559963)
               

               
               1-219, gnl|monDom2|scaffold_44 (11319425-11318825)
               

               
               1-219, gnl|oryCun1|scaffold_204815 (171076-170473)
               

               
               1-219, gnl|panTro1|chr19 (31360130-31360732)
               

               
               1-219, gnl|rheMac2|chr16 (27820056-27820658)
               

               
               1-219, gnl|rn3|chr10 (68729974-68730577)
               

               
               1-219, gnl|tetNig1|chr2 (1286232-1286831)
               

               
               1-219, gnl|xenTro1|scaffold_221 (1017604-1018176)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr19 (12591408-12591626)
               

               
               1-219, gnl|canFam2|chr9 (43823693-43823091)
               

               
               1-219, gnl|danRer3|chr12 (25152319-25151713)
               

               
               1-219, gnl|dasNov1|scaffold_62588 (3873-4475)
               

               
               1-219, gnl|fr1|chrUn (278032933-278033532)
               

               
               1-219, gnl|hg17|chr17 (27839076-27839678)
               

               
               1-219, gnl|Hg17|chr17 (27839413-27839631)
               

               
               1-219, gnl|mm7|chr11 (80559408-80560011)
               

               
               1-219, gnl|Mm7|chr11 (80559745-80559963)
               

               
               1-219, gnl|monDom2|scaffold_44 (11319425-11318825)
               

               
               1-219, gnl|oryCun1|scaffold_204815 (171076-170473)
               

               
               1-219, gnl|panTro1|chr19 (31360130-31360732)
               

               
               1-219, gnl|rheMac2|chr16 (27820056-27820658)
               

               
               1-219, gnl|rn3|chr10 (68729974-68730577)
               

               
               1-219, gnl|tetNig1|chr2 (1286232-1286831)
               

               
               1-219, gnl|xenTro1|scaffold_221 (1017604-1018176)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ebs (0.473205)
               

               
               ecc (0.23007)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               ecc (0.23007)

	1-219, gnl\|bosTau2\|chr19 (12591408-12591626)
	1-219, gnl\|canFam2\|chr9 (43823693-43823091)
	1-219, gnl\|danRer3\|chr12 (25152319-25151713)
	1-219, gnl\|dasNov1\|scaffold_62588 (3873-4475)
	1-219, gnl\|fr1\|chrUn (278032933-278033532)
	1-219, gnl\|hg17\|chr17 (27839076-27839678)
	1-219, gnl\|Hg17\|chr17 (27839413-27839631)
	1-219, gnl\|mm7\|chr11 (80559408-80560011)
	1-219, gnl\|Mm7\|chr11 (80559745-80559963)
	1-219, gnl\|monDom2\|scaffold_44 (11319425-11318825)
	1-219, gnl\|oryCun1\|scaffold_204815 (171076-170473)
	1-219, gnl\|panTro1\|chr19 (31360130-31360732)
	1-219, gnl\|rheMac2\|chr16 (27820056-27820658)
	1-219, gnl\|rn3\|chr10 (68729974-68730577)
	1-219, gnl\|tetNig1\|chr2 (1286232-1286831)
	1-219, gnl\|xenTro1\|scaffold_221 (1017604-1018176)