Ss1.1-rebs29c_g12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGGGCCACACCACCCGGCGCCGGCTCTGCGGGGCGCCCGCGTCGGGCCGCTCCTCCT CCGGGGGCTCCGGGGGCCCTTGCGCCAGCTCCCAGTCGTAGGGGGGGCCCTCGGCCAGCG TCTCCTCGGTGTAGAAGTCCCACACCTTCAGGTTGGACACGTTGCTGTAGGGCCGCAGGA CCTCGGCGTCCTCGGGCGCGTACATGTAGTTGTAGAAGACGGGCGCCCGCTTGCTCAGCC GCTCCGCGTACTCCCACACCGACCGGCAGGCCTGCGGGGCGCGGCGCTCGCCCTTCTCCT CGTACAGCAGCCCCAGCTCGATGCGTTCATAGTCGGAGTCGAGCAGGAAGGTCCGGAAGC GGCGGGACGCGTGGTGGTAGCCGAGGAACTTGAGGTAGAACGGGCTGAACTCGAATTCCC TGGGGAACTGCAGGTGGATCTGGTACACGCAGTCCAGGAACTGCAGGAAGACGGGCGTGA AGCCACTGCTCTGCCCCGCCAGCGTGTGGGCCCCGCGGTGGCTGAAGCGATGGCCGAAGG ACAGCCACTCCTTCTCCACCAGCAGCCGGAAGCCCTCCAGGGTGCGGTAGAAGGGGTCCG AGAGCAGCTGCACCAGGGACACCACCTGTGTGGTGATGTCCCAGCCGTCCTCCAGGCTCA CCAGGACGGAGGAGCCCGAATCCAGCAGCTCCACCACCAGCACCGACACCTGCAGCAGCC TGTGGATCTGGATTAGCCCCTCAGAGTCCTCCAGCGAGCGCAGGAAGGAAGCTGGGCCAG GCTCGGTAGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGGGCCACACCACCCGGCGCCGGCTCTGCGGGGCGCCCGCGTCGGGCCGCTCCTCCT CCGGGGGCTCCGGGGGCCCTTGCGCCAGCTCCCAGTCGTAGGGGGGGCCCTCGGCCAGCG TCTCCTCGGTGTAGAAGTCCCACACCTTCAGGTTGGACACGTTGCTGTAGGGCCGCAGGA CCTCGGCGTCCTCGGGCGCGTACATGTAGTTGTAGAAGACGGGCGCCCGCTTGCTCAGCC GCTCCGCGTACTCCCACACCGACCGGCAGGCCTGCGGGGCGCGGCGCTCGCCCTTCTCCT CGTACAGCAGCCCCAGCTCGATGCGTTCATAGTCGGAGTCGAGCAGGAAGGTCCGGAAGC GGCGGGACGCGTGGTGGTAGCCGAGGAACTTGAGGTAGAACGGGCTGAACTCGAATTCCC TGGGGAACTGCAGGTGGATCTGGTACACGCAGTCCAGGAACTGCAGGAAGACGGGCGTGA AGCCACTGCTCTGCCCCGCCAGCGTGTGGGCCCCGCGGTGGCTGAAGCGATGGCCGAAGG ACAGCCACTCCTTCTCCACCAGCAGCCGGAAGCCCTCCAGGGTGCGGTAGAAGGGGTCCG AGAGCAGCTGCACCAGGGACACCACCTGTGTGGTGATGTCCCAGCCGTCCTCCAGGCTCA CCAGGACGGAGGAGCCCGAATCCAGCAGCTCCACCACCAGCACCGACACCTGCAGCAGCC TGTGGATCTGGATTAGCCCCTCAGAGTCCTCCAGCGAGCGCAGGAAGGAAGCTGGGCCAG GCTCGGTAGCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 69-186, - strand, RNAz p=0.553631 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 69-186, - strand, RNAz p=0.553631 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr5 (75826526-75826341) | |
| 1-186, gnl|canFam2|chr21 (36203839-36204068) | |
| 1-186, gnl|canFam2|chr21 (36203841-36204040) | |
| 1-186, gnl|danRer3|chr4 (9889468-9889714) | |
| 1-186, gnl|danRer3|chr4 (9889488-9889687) | |
| 1-186, gnl|dasNov1|scaffold_51423 (11348-11600) | |
| 1-186, gnl|dasNov1|scaffold_51423 (11372-11572) | |
| 1-186, gnl|echTel1|scaffold_156975 (1937-2166) | |
| 1-186, gnl|echTel1|scaffold_156975 (1947-2143) | |
| 1-186, gnl|fr1|chrUn (37143467-37143223) | |
| 1-186, gnl|fr1|chrUn (37143430-37143249) | |
| 1-186, gnl|galGal2|chrUn (108144298-108144567) | |
| 1-186, gnl|galGal2|chrUn (108144321-108144524) | |
| 1-186, gnl|hg17|chr22 (49183066-49183334) | |
| 1-186, gnl|Hg17|chr22 (49183135-49183320) | |
| 1-186, gnl|hg17|chr8 (56525261-56525461) | |
| 1-186, gnl|loxAfr1|scaffold_98806 (1104-874) | |
| 1-186, gnl|loxAfr1|scaffold_98806 (1102-902) | |
| 1-186, gnl|mm7|chr15 (89376295-89376548) | |
| 1-186, gnl|mm7|chr15 (89376320-89376520) | |
| 1-186, gnl|Mm7|chr15 (89376364-89376549) | |
| 1-186, gnl|monDom2|scaffold_119 (917549-917775) | |
| 1-186, gnl|oryCun1|scaffold_207716 (226-4) | |
| 1-186, gnl|oryCun1|scaffold_207716 (204-4) | |
| 1-186, gnl|panTro1|chr23 (49657756-49658009) | |
| 1-186, gnl|panTro1|chr7 (58219192-58219391) | |
| 1-186, gnl|rheMac2|chr10 (94474175-94474428) | |
| 1-186, gnl|rheMac2|chr8 (58058754-58058952) | |
| 1-186, gnl|rn3|chr7 (127623672-127623925) | |
| 1-186, gnl|rn3|chr7 (127623697-127623897) | |
| 1-186, gnl|tetNig1|chrUn_random (121499264-121499518) | |
| 1-186, gnl|tetNig1|chrUn_random (121499280-121499476) | |
| 1-186, gnl|xenTro1|scaffold_534 (736926-737161) | |
| 1-186, gnl|xenTro1|scaffold_534 (736934-737130) | |
| 440-627, gnl|bosTau2|chr15 (29346015-29346202) | |
| 440-627, gnl|Hg17|chr11 (9786123-9786310) | |
| 440-627, gnl|Mm7|chr7 (106245032-106245219) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr5 (75826526-75826341) | |
| 1-186, gnl|canFam2|chr21 (36203839-36204068) | |
| 1-186, gnl|canFam2|chr21 (36203841-36204040) | |
| 1-186, gnl|danRer3|chr4 (9889468-9889714) | |
| 1-186, gnl|danRer3|chr4 (9889488-9889687) | |
| 1-186, gnl|dasNov1|scaffold_51423 (11348-11600) | |
| 1-186, gnl|dasNov1|scaffold_51423 (11372-11572) | |
| 1-186, gnl|echTel1|scaffold_156975 (1937-2166) | |
| 1-186, gnl|echTel1|scaffold_156975 (1947-2143) | |
| 1-186, gnl|fr1|chrUn (37143467-37143223) | |
| 1-186, gnl|fr1|chrUn (37143430-37143249) | |
| 1-186, gnl|galGal2|chrUn (108144298-108144567) | |
| 1-186, gnl|galGal2|chrUn (108144321-108144524) | |
| 1-186, gnl|hg17|chr22 (49183066-49183334) | |
| 1-186, gnl|Hg17|chr22 (49183135-49183320) | |
| 1-186, gnl|hg17|chr8 (56525261-56525461) | |
| 1-186, gnl|loxAfr1|scaffold_98806 (1104-874) | |
| 1-186, gnl|loxAfr1|scaffold_98806 (1102-902) | |
| 1-186, gnl|mm7|chr15 (89376295-89376548) | |
| 1-186, gnl|mm7|chr15 (89376320-89376520) | |
| 1-186, gnl|Mm7|chr15 (89376364-89376549) | |
| 1-186, gnl|monDom2|scaffold_119 (917549-917775) | |
| 1-186, gnl|oryCun1|scaffold_207716 (226-4) | |
| 1-186, gnl|oryCun1|scaffold_207716 (204-4) | |
| 1-186, gnl|panTro1|chr23 (49657756-49658009) | |
| 1-186, gnl|panTro1|chr7 (58219192-58219391) | |
| 1-186, gnl|rheMac2|chr10 (94474175-94474428) | |
| 1-186, gnl|rheMac2|chr8 (58058754-58058952) | |
| 1-186, gnl|rn3|chr7 (127623672-127623925) | |
| 1-186, gnl|rn3|chr7 (127623697-127623897) | |
| 1-186, gnl|tetNig1|chrUn_random (121499264-121499518) | |
| 1-186, gnl|tetNig1|chrUn_random (121499280-121499476) | |
| 1-186, gnl|xenTro1|scaffold_534 (736926-737161) | |
| 1-186, gnl|xenTro1|scaffold_534 (736934-737130) | |
| 440-627, gnl|bosTau2|chr15 (29346015-29346202) | |
| 440-627, gnl|Hg17|chr11 (9786123-9786310) | |
| 440-627, gnl|Mm7|chr7 (106245032-106245219) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |