Non-Coding RNA Search

Ss1.1-rebs29c_k7.5

Sequence:


               
               TCTTTGTGAACTTCCCGTCGGCCAAGCAGTACTTCAGCCAGTTCAAGCACATGGAGGATC
CCCTGGAGATGGAGCGGAGCCCACAGCTGCGGAAGCACGCCTGCCGGGTCATGGGGGCTC
TCAACACCGTGGTGGAGAACCTGCACGACCCCGAGAAGGTGTCCTCTGTGCTCGCCCTCG
TGGGCAAGGCCCACGCCCTCAAGCACAAGGTGGAGCCCGTGTACTTCAAGATCCTCTCTG
GGGTCATCCTGGAGGTGATCGCCGAGGAATTTGCCAACGACTTCCCACCCGAGACGCAGA
GAGCCTGGGCCAAGCTTCGCAGCCTCATCTACAGCCACGTGACCGCTGCCTACAAAGAAG
TGGGCTGGGTACAGCAGGTCCCCAACGCCACCACCCCCCCAGCCACGCTGCCCTCTTCGG
GGCCGTAGGACCCTCTCTCTCCTCCCCCGTTCCTGGCAGCACCTTGAGCAGAAGGCTGAG
TTCTGAAGACCCTCCACCTCTGGGTGCCAAGGAAGCTGGAGGAATCCCTGACTCGTCTTC
CCGGAAAGACGCCACCTCCGCCTCGGCCACAGTCCCCCTGGAGCCGCCGGGAGGTGGCTC
TGGCTGCGGACCCCAGCTCGGGGGCGCGGCGGGTGGCCTGTGGGGGTGGGGGACCCTTCC
TCCTTGAAGAGCCGGGCACACCCTTCTTAGCTTTTCTACTCACTGTTAGAGACGCAGGCG
AGCGGCTGGCAGGAAGCAGGGACAGGTCTGTGAGTCACTCGAGGAACAGAGCAGCCCTGT
TTCTCTCTGCCTGGCCGCACGCAGGTCTCCATGTCACTTATCTAGAGCACCACGCACACA
CGTCTACCGTATATCGGATATATTCTATATACAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTGTGAACTTCCCGTCGGCCAAGCAGTACTTCAGCCAGTTCAAGCACATGGAGGATC
CCCTGGAGATGGAGCGGAGCCCACAGCTGCGGAAGCACGCCTGCCGGGTCATGGGGGCTC
TCAACACCGTGGTGGAGAACCTGCACGACCCCGAGAAGGTGTCCTCTGTGCTCGCCCTCG
TGGGCAAGGCCCACGCCCTCAAGCACAAGGTGGAGCCCGTGTACTTCAAGATCCTCTCTG
GGGTCATCCTGGAGGTGATCGCCGAGGAATTTGCCAACGACTTCCCACCCGAGACGCAGA
GAGCCTGGGCCAAGCTTCGCAGCCTCATCTACAGCCACGTGACCGCTGCCTACAAAGAAG
TGGGCTGGGTACAGCAGGTCCCCAACGCCACCACCCCCCCAGCCACGCTGCCCTCTTCGG
GGCCGTAGGACCCTCTCTCTCCTCCCCCGTTCCTGGCAGCACCTTGAGCAGAAGGCTGAG
TTCTGAAGACCCTCCACCTCTGGGTGCCAAGGAAGCTGGAGGAATCCCTGACTCGTCTTC
CCGGAAAGACGCCACCTCCGCCTCGGCCACAGTCCCCCTGGAGCCGCCGGGAGGTGGCTC
TGGCTGCGGACCCCAGCTCGGGGGCGCGGCGGGTGGCCTGTGGGGGTGGGGGACCCTTCC
TCCTTGAAGAGCCGGGCACACCCTTCTTAGCTTTTCTACTCACTGTTAGAGACGCAGGCG
AGCGGCTGGCAGGAAGCAGGGACAGGTCTGTGAGTCACTCGAGGAACAGAGCAGCCCTGT
TTCTCTCTGCCTGGCCGCACGCAGGTCTCCATGTCACTTATCTAGAGCACCACGCACACA
CGTCTACCGTATATCGGATATATTCTATATACAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886579|ref|XP_587427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886579|ref|XP_587427.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.774153
               

               
               579-692, + strand, RNAz p=0.997911

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.774153
               

               
               579-692, + strand, RNAz p=0.997911

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-230, gnl|bosTau2|chr19 (49150558-49150787)
               

               
               1-230, gnl|Hg17|chr17 (72039366-72039137)
               

               
               1-230, gnl|Mm7|chr11 (116759058-116758829)
               


               
               392-876, gnl|bosTau2|chr19 (49153608-49154088)
               

               
               392-876, gnl|Hg17|chr17 (72036291-72035830)
               

               
               392-876, gnl|Mm7|chr11 (116756040-116755566)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr19 (49150558-49150787)
               

               
               1-230, gnl|Hg17|chr17 (72039366-72039137)
               

               
               1-230, gnl|Mm7|chr11 (116759058-116758829)
               


               
               392-876, gnl|bosTau2|chr19 (49153608-49154088)
               

               
               392-876, gnl|Hg17|chr17 (72036291-72035830)
               

               
               392-876, gnl|Mm7|chr11 (116756040-116755566)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	40-159, - strand, RNAz p=0.774153
	579-692, + strand, RNAz p=0.997911

	1-230, gnl\|bosTau2\|chr19 (49150558-49150787)
	1-230, gnl\|Hg17\|chr17 (72039366-72039137)
	1-230, gnl\|Mm7\|chr11 (116759058-116758829)

	392-876, gnl\|bosTau2\|chr19 (49153608-49154088)
	392-876, gnl\|Hg17\|chr17 (72036291-72035830)
	392-876, gnl\|Mm7\|chr11 (116756040-116755566)