Non-Coding RNA Search

Ss1.1-rebs30c_a13.5

Sequence:


               
               CCGGTTCCGCCGCCCTTTTTCTCTTCAACGAGGCGGCCGAGCAGACGCAGAGATGCAGAT
CTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGATACCAT
TGAGAATGTCAAAGCTAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCT
GATTTTTGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAATATCCAGAA
AGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGCATCATCGAGCCCTCCCTCCG
CCAGCTCGCTCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCT
GCATCCCCGCGCGGTGAACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGCGCCC
CAAGAAGAAGGTCAAATAAGACCTTTCCACCAGCTTCTCCTTTGTCTGCAGGGCAGCCTC
CTGCCCAAGCCCCATGGCCCTGGGGCCTCAATAAAGTTTCCCTTTCGTTGACTGGAGCAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGTTCCGCCGCCCTTTTTCTCTTCAACGAGGCGGCCGAGCAGACGCAGAGATGCAGAT
CTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGATACCAT
TGAGAATGTCAAAGCTAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCT
GATTTTTGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAATATCCAGAA
AGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGCATCATCGAGCCCTCCCTCCG
CCAGCTCGCTCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCT
GCATCCCCGCGCGGTGAACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGCGCCC
CAAGAAGAAGGTCAAATAAGACCTTTCCACCAGCTTCTCCTTTGTCTGCAGGGCAGCCTC
CTGCCCAAGCCCCATGGCCCTGGGGCCTCAATAAAGTTTCCCTTTCGTTGACTGGAGCAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13928952|ref|NP_113875.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13928952|ref|NP_113875.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-227, - strand, RNAz p=0.99162
               

               
               361-515, - strand, RNAz p=0.976503

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-227, - strand, RNAz p=0.99162
               

               
               361-515, - strand, RNAz p=0.976503

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-515, gnl|bosTau2|chr16 (55144607-55144132)
               

               
               7-515, gnl|Mm7|chr9 (72209894-72209474)
               


               
               51-227, gnl|bosTau2|chr11 (21613176-21613352)
               

               
               51-227, gnl|Hg17|chr1 (189416968-189417144)
               

               
               51-227, gnl|Mm7|chr9 (83507904-83508066)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-515, gnl|bosTau2|chr16 (55144607-55144132)
               

               
               7-515, gnl|Mm7|chr9 (72209894-72209474)
               


               
               51-227, gnl|bosTau2|chr11 (21613176-21613352)
               

               
               51-227, gnl|Hg17|chr1 (189416968-189417144)
               

               
               51-227, gnl|Mm7|chr9 (83507904-83508066)

Expressed library(ies): 68 entry(ies)

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Expressed library(ies): 68 entry(ies)

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               cly (5.54952)
               

               
               nca (4.51684)
               

               
               mcp (4.26621)
               

               
               cag (4.23344)
               

               
               cga (4.18644)
               

               
               eje (4.15102)
               

               
               ese (3.92157)
               

               
               hlv (3.89918)
               

               
               fty (3.86847)
               

               
               csp (3.70729)
               

               
               lnt (3.70001)
               

               
               med (3.48756)
               

               
               elu (3.46821)
               

               
               duo (3.28322)
               

               
               nco (3.23468)
               

               
               cov (3.17167)
               

               
               ill (3.16067)
               

               
               eru (3.12125)
               

               
               eep (2.81897)
               

               
               ece (2.75166)
               

               
               col (2.73011)
               

               
               pty (2.71157)
               

               
               fli (2.63745)
               

               
               fce (2.44432)
               

               
               ecc (2.3007)
               

               
               nlu (2.30017)
               

               
               jca (2.2792)
               

               
               ebs (2.12942)
               

               
               nmm (1.99203)
               

               
               nbm (1.98649)
               

               
               ton (1.9305)
               

               
               nms (1.92472)
               

               
               mas (1.89274)
               

               
               fbs (1.75346)
               

               
               nep (1.65532)
               

               
               jej (1.58275)
               

               
               eye (1.53453)
               

               
               cli (1.52812)
               

               
               eli (1.51814)
               

               
               ute (1.46063)
               

               
               hyp (1.42837)
               

               
               fhi (1.35662)
               

               
               amn (1.25313)
               

               
               nje (1.16144)
               

               
               cst (0.840218)
               

               
               hea (0.817996)
               

               
               fcc (0.791139)
               

               
               che (0.68157)
               

               
               cut (0.679694)
               

               
               cje (0.660939)
               

               
               cki (0.660939)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               tes (0.415628)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (5.54952)
               

               
               nca (4.51684)
               

               
               mcp (4.26621)
               

               
               cag (4.23344)
               

               
               cga (4.18644)
               

               
               eje (4.15102)
               

               
               ese (3.92157)
               

               
               hlv (3.89918)
               

               
               fty (3.86847)
               

               
               csp (3.70729)
               

               
               lnt (3.70001)
               

               
               med (3.48756)
               

               
               elu (3.46821)
               

               
               duo (3.28322)
               

               
               nco (3.23468)
               

               
               cov (3.17167)
               

               
               ill (3.16067)
               

               
               eru (3.12125)
               

               
               eep (2.81897)
               

               
               ece (2.75166)
               

               
               col (2.73011)
               

               
               pty (2.71157)
               

               
               fli (2.63745)
               

               
               fce (2.44432)
               

               
               ecc (2.3007)
               

               
               nlu (2.30017)
               

               
               jca (2.2792)
               

               
               ebs (2.12942)
               

               
               nmm (1.99203)
               

               
               nbm (1.98649)
               

               
               ton (1.9305)
               

               
               nms (1.92472)
               

               
               mas (1.89274)
               

               
               fbs (1.75346)
               

               
               nep (1.65532)
               

               
               jej (1.58275)
               

               
               eye (1.53453)
               

               
               cli (1.52812)
               

               
               eli (1.51814)
               

               
               ute (1.46063)
               

               
               hyp (1.42837)
               

               
               fhi (1.35662)
               

               
               amn (1.25313)
               

               
               nje (1.16144)
               

               
               cst (0.840218)
               

               
               hea (0.817996)
               

               
               fcc (0.791139)
               

               
               che (0.68157)
               

               
               cut (0.679694)
               

               
               cje (0.660939)
               

               
               cki (0.660939)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               tes (0.415628)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)

	51-227, - strand, RNAz p=0.99162
	361-515, - strand, RNAz p=0.976503

	7-515, gnl\|bosTau2\|chr16 (55144607-55144132)
	7-515, gnl\|Mm7\|chr9 (72209894-72209474)

	51-227, gnl\|bosTau2\|chr11 (21613176-21613352)
	51-227, gnl\|Hg17\|chr1 (189416968-189417144)
	51-227, gnl\|Mm7\|chr9 (83507904-83508066)

	cly (5.54952)
	nca (4.51684)
	mcp (4.26621)
	cag (4.23344)
	cga (4.18644)
	eje (4.15102)
	ese (3.92157)
	hlv (3.89918)
	fty (3.86847)
	csp (3.70729)
	lnt (3.70001)
	med (3.48756)
	elu (3.46821)
	duo (3.28322)
	nco (3.23468)
	cov (3.17167)
	ill (3.16067)
	eru (3.12125)
	eep (2.81897)
	ece (2.75166)
	col (2.73011)
	pty (2.71157)
	fli (2.63745)
	fce (2.44432)
	ecc (2.3007)
	nlu (2.30017)
	jca (2.2792)
	ebs (2.12942)
	nmm (1.99203)
	nbm (1.98649)
	ton (1.9305)
	nms (1.92472)
	mas (1.89274)
	fbs (1.75346)
	nep (1.65532)
	jej (1.58275)
	eye (1.53453)
	cli (1.52812)
	eli (1.51814)
	ute (1.46063)
	hyp (1.42837)
	fhi (1.35662)
	amn (1.25313)
	nje (1.16144)
	cst (0.840218)
	hea (0.817996)
	fcc (0.791139)
	che (0.68157)
	cut (0.679694)
	cje (0.660939)
	cki (0.660939)
	pla (0.534688)
	pro (0.512033)
	cbl (0.45919)
	tes (0.415628)
	ssp (0.271039)
	thg (0.253582)
	clu (0.239292)
	cmu (0.186393)
	sto (0.179824)
	ctl (0.153069)
	bfe (0.149858)
	fat (0.147427)
	csk (0.140746)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	bla (0.124347)